Browse Element(s) Details


Os.3768.1.S1_at

Description gb:AB037371.1
DB_XREF= gi:9453866
GEN=rsp1
TID=Os.3768.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3768 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) rsp1 mRNA for subtilisin-like serine protease, complete cds.
PROD=subtilisin-like serine protease
FL= gb:AB037371.1 gb:AK072929.1 gb:AK100551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4459011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0009897cellular_componentexternal side of plasma membrane
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3768.1.S1_at--1067--931Chr02:27014931..27014955 (25 bp)
AGGAAGTTCACGGTCACCTTCAGGG
LOC_Os02g44590
Os.3768.1.S1_at--411--7171Chr02:27015045..27015069 (25 bp)
GTCTCCGCCCAAAAGTTCTTGAACG
LOC_Os02g44590
Os.3768.1.S1_at--71--9591Chr02:27015061..27015085 (25 bp)
TCTTGAACGGTAACACGAGCTCCTC
LOC_Os02g44590
Os.3768.1.S1_at--328--4671Chr02:27015093..27015117 (25 bp)
GCGGGCCATTGATTGTTGATTACGT
LOC_Os02g44590
Os.3768.1.S1_at--378--4211Chr02:27015171..27015195 (25 bp)
CCCCTGATGATTGTCCTCGAAAAAA
LOC_Os02g44590
Os.3768.1.S1_at--738--7671Chr02:27015282..27015306 (25 bp)
GGGATTCTTTTTCCATGATGGCCAT
LOC_Os02g44590
Os.3768.1.S1_at--636--871Chr02:27015299..27015323 (25 bp)
ATGGCCATGGCCTGGATATGTGCCC
LOC_Os02g44590
Os.3768.1.S1_at--1073--211Chr02:27015314..27015338 (25 bp)
ATATGTGCCCCTGAACCAAACTGCT
LOC_Os02g44590
Os.3768.1.S1_at--427--2551Chr02:27015332..27015356 (25 bp)
AACTGCTTCGATATTGGGCTTGATG
LOC_Os02g44590
Os.3768.1.S1_at--606--7991Chr02:27015432..27015456 (25 bp)
GGATGATAGCACTACGGCACTACCT
LOC_Os02g44590
Os.3768.1.S1_at--415--7671Chr02:27015467..27015491 (25 bp)
GGGATATATCTCACACACAATTCAT
LOC_Os02g44590
Target Sequence 
AGGAAGTTCACGGTCACCTTCAGGGGCGCGAATGGCGGCCCGATGAAGGGCGGCGTCGCCGAGGGGCAGCTCAGGTGGGT
CTCGCCGGACCACGTGGTGCGCAGCCCGATCGTCGTCTCCGCCCAAAAGTTCTTGAACGGTAACACGAGCTCCTCCGATC
ACGCGGGCCATTGATTGTTGATTACGTAGCTTTGCCAGTAAATGGGGTACTTGATTAGACCCCCAAGGATTATAAACTGC
CCCCTGATGATTGTCCTCGAAAAAAGATGAAGAGAAAGACAAAATAACTCTATTAGAAGATGGACCAAGATGCGAAGGGA
TTGCGTGGCCGGAAAAAAAAAAAAGCAACATGGGATTCTTTTTCCATGATGGCCATGGCCTGGATATGTGCCCCTGAACC
AAACTGCTTCGATATTGGGCTTGATGGGTTTGTTACGGATTTAGACCTTTATACAATTAGCATAGCTAAAATTTCGATCT
TATTGTTGTGGGTTGGATATTGGATGATAGCACTACGGCACTACCTTTGTGGATAAGGGATATATCTCACACACAATTCA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis