Browse Element(s) Details


Os.52949.1.S1_s_at

Description gb:AK070072.1
DB_XREF= gi:32980096
TID=Os.52949.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043N14, full insert sequence.
FL= gb:AK070072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4455011/11NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52949.1.S1_s_at--65--1273Chr08:10057925..10057949 (25 bp)
AGATTTAGGTGGTCACGGGCCATAA
NONE
Os.52949.1.S1_s_at--869--7813Chr08:10057935..10057959 (25 bp)
GGTCACGGGCCATAATAAATCATTG
NONE
Os.52949.1.S1_s_at--126--7592Chr08:10058098..10058122 (25 bp)
GGGCTCACTGCTTATATTTTATTGA
NONE
Os.52949.1.S1_s_at--1059--1552Chr08:10058122..10058146 (25 bp)
AGCTTAGCTATATTGTATTTCTCTA
NONE
Os.52949.1.S1_s_at--134--9512Chr08:10058141..10058165 (25 bp)
TCTCTAAACTGCATAACCATCTCAC
NONE
Os.52949.1.S1_s_at--196--9812Chr08:10058154..10058178 (25 bp)
TAACCATCTCACTGCATAGCCCATA
NONE
Os.52949.1.S1_s_at--1015--7352Chr08:10058192..10058216 (25 bp)
GTGACAATAACAGCTACATCTCTAC
NONE
Os.52949.1.S1_s_at--861--7832Chr08:10058250..10058274 (25 bp)
GGTACATAAAGTGCCTCAAGTTGAT
NONE
Os.52949.1.S1_s_at--107--3092Chr08:10058382..10058406 (25 bp)
AATAAGCTGTAGTGTGTCAGATATT
NONE
Os.52949.1.S1_s_at--226--4232Chr08:10058436..10058460 (25 bp)
CCGACAACATTTTGCAGTGGGCTTA
NONE
Os.52949.1.S1_s_at--58--5033Chr08:10058449..10058473 (25 bp)
GCAGTGGGCTTATCTATGAATATTT
NONE
Target Sequence 
AGATTTAGGTGGTCACGGGCCATAATAAATCATTGAGAATAGGTCATATAACATTCAGTTATGTCATCACAAACAATCTG
ATTTTGACAAAATTAGGCAACACAGAATTTAATGTATGCAAGCATCCAGATACCTAACACGGCTAACACTATTGACTGCT
TTTTGTTTCGAGGGGGCTCACTGCTTATATTTTATTGAGCTTAGCTATATTGTATTTCTCTAAACTGCATAACCATCTCA
CTGCATAGCCCATATCTTTATAGCATTGTGACAATAACAGCTACATCTCTACAATATTACTACCGGTAAGAAATGAAGGA
TTAGCGGTACATAAAGTGCCTCAAGTTGATTGGAACAAGCAACCATTTGTATAACATATATATCTTTCAGACTCAAGGTG
GAGTTTGATCTCTACGTAAAAAAAAAAGCAATCGGTGTTTTCTGTACTCGAATATGTAAATAAGCTGTAGTGTGTCAGAT
ATTATAATGGTGTTCTTTATAGAGCACACGTGCCGACAACATTTTGCAGTGGGCTTATCTATGAATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52949.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis