Browse Element(s) Details


Os.27950.1.S1_a_at

Description gb:AK103515.1
DB_XREF= gi:32988724
TID=Os.27950.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131G16, full insert sequence.
FL= gb:AK103515.1 gb:AK067099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4452011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005737cellular_componentcytoplasm
GO:0004289molecular_functionsubtilase activity
GO:0016806molecular_functiondipeptidyl-peptidase and tripeptidyl-peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27950.1.S1_a_at--432--2771Chr02:26956397..26956421 (25 bp)
AAGACCCCTTATCGACCAGTGGAGT
LOC_Os02g44520
Os.27950.1.S1_a_at--1052--6091Chr02:26956418..26956442 (25 bp)
GAGTCTAATCTTTGTTCACTTCCTC
LOC_Os02g44520
Os.27950.1.S1_a_at--1118--9291Chr02:26956441..26956465 (25 bp)
TCCCAGCCGTGATAGATTACCATCT
LOC_Os02g44520
Os.27950.1.S1_a_at--337--7271Chr02:26956603..26956627 (25 bp)
GTGCTGAAATAAAGCCCCGTGTGCC
LOC_Os02g44520
Os.27950.1.S1_a_at--187--7471Chr02:26956621..26956645 (25 bp)
GTGTGCCCCTACTTAACAACAGAAT
LOC_Os02g44520
Os.27950.1.S1_a_at--82--2011Chr02:26957384..26957408 (25 bp)
ACTCTTCTGGTGACGTCTATCCTAA
LOC_Os02g44520
Os.27950.1.S1_a_at--1101--2291Chr02:26959553..26959577 (25 bp)
AAATGGCACCTTCAAATCCTCTATT
LOC_Os02g44520
Os.27950.1.S1_a_at--513--10112Chr02:26959679..26959703 (25 bp)
TATGTGGGTCCACCATCTAGAGAAA
LOC_Os02g44520
Os.27950.1.S1_a_at--164--3291Chr02:26959857..26959878 (22 bp)
CAAAGAATGTTCTACCTGGGTCTGT
LOC_Os02g44520
Os.27950.1.S1_a_at--864--3891Chr02:26959869..26959893 (25 bp)
CTGGGTCTGTTTTGGTTGGGTCAAT
LOC_Os02g44520
Os.27950.1.S1_a_at--1150--9111Chr02:26959903..26959927 (25 bp)
TGCGGTAAGCTCTTTCAGCAAGAAA
LOC_Os02g44520
Target Sequence 
AAGACCCCTTATCGACCAGTGGAGTCTAATCTTTGTTCACTTCCTCCCAGCCGTGATAGATTACCATCTGGCAAGCAAAT
CATAGCACTAACTCTGACTTACAAATTCAAACTAGAGGATGGTGCTGAAATAAAGCCCCGTGTGCCCCTACTTAACAACA
GAATATATGATAACAAGTTCGAGTCTCAGTATTATAGAATATCAGATTCAAACAAGTGTGTCTACTCTTCTGGTGACGTC
TATCCTAATTATGTCAAACTCTCAAAAGGTGAATACACGCTGCAATTGTACATAAGGCATGACAATGTGCAGTTATTGGA
GAAACTGAAGCAGTTGGTTCTATTTATCGAGAGGAAGCTAGAGAAAAAGGATTTCATTCAATTGAGTTTCTACTCTGAAC
CTGATGGCCCTACAGTTGGAAATGGCACCTTCAAATCCTCTATTTTAGTTCCAGGAGAACCAGAAGCATTCTATGTGGGT
CCACCATCTAGAGAAAAACTTCCAAAGAATGTTCTACCTGGGTCTGTTTTGGTTGGGTCAATTACCTATGGTGCGGTAAG
CTCTTTCAGCAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27950.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis