Browse Element(s) Details


OsAffx.12492.1.S1_x_at

Description tigr:9630.m04306
TID=OsAffx.12492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucose ceramide glucosyltransferase-like 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4451010/11UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44460NANA2+26911409..26912635retrotransposon protein, putative, unclassified
LOC_Os02g44470Os.52855.1.S1_at11/112+26914037..26916159Actin-depolymerizing factor, putative, expressed
LOC_Os02g44480Os.51892.1.S1_at11/112+26916643..26918340pentatricopeptide, putative
LOC_Os02g44490Os.52714.1.S1_at10/112+26918848..26921304C2 domain containing protein, expressed
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0016051biological_processcarbohydrate biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0003980molecular_functionUDP-glucose:glycoprotein glucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12492.1.S1_x_at--1092--10691Chr02:26943507..26943531 (25 bp)
TTGCGTATACTCCATTCTGCGATAA
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--408--3171NONE
AATTGTTTGCTAACTCCCTTTTGCT
NONE
OsAffx.12492.1.S1_x_at--1147--10371Chr02:26943635..26943659 (25 bp)
TTTTGCTTTCCCTCTGTGAAAGGGT
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--574--1711Chr02:26943691..26943715 (25 bp)
ACCACATCAGGTGGGTGTGATCTTT
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--194--7411Chr02:26943707..26943792 (25 bp)
GTGATCTTTGCATATGTGCTCTTTA
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--69--9451Chr02:26943814..26943838 (25 bp)
TCGGCAAACTGCTTCTGGAGATACT
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--924--6471Chr02:26943833..26943857 (25 bp)
GATACTCTACGGGTCTTCTATGAAA
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--40--5831Chr02:26943869..26943893 (25 bp)
GACCCCAATAGTCTCTCAAATCTTG
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--889--3471Chr02:26944652..26944676 (25 bp)
CAGGATCTCCCAAATTATGCTCAGC
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--931--10131Chr02:26944667..26944691 (25 bp)
TATGCTCAGCATACTGTGCCCATAT
LOC_Os02g44510
OsAffx.12492.1.S1_x_at--115--931Chr02:26944942..26944966 (25 bp)
AGGCAGTTCACAGCACGAATCTTGG
LOC_Os02g44510
Target Sequence 
TTGCGTATACTCCATTCTGCGATAACAACAAGGAGATGGATGGCTATCGATTTTGGAAGCAATTGTTTGCTAACTCCCTT
TTGCTTTCCCTCTGTGAAAGGGTTTCTGGAAAGATCATCTGCGAGGAAGACCATACCACATCAGGTGGGTGTGATCTTTG
CATATGTGCTCTTTATGTTGTTGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAA
CACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTC
TCTCTCCCTCAAGAATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTG
CAACAACCCAATGACAAAGGAGCCAAAGCTTCAGGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAG
CAAGGCAGTTCACAGCACGAATCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12492.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis