Browse Element(s) Details


Os.4833.1.S1_at

Description gb:AK058456.1
DB_XREF= gi:32968474
TID=Os.4833.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H08, full insert sequence.
FL= gb:AK105165.1 gb:AK058456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4450011/11phospholipid hydroperoxide glutathione peroxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44440NANA2+26901457..26903865retrotransposon protein, putative, unclassified
LOC_Os02g44450NANA2+26907242..26908504hypothetical protein
LOC_Os02g44460NANA2+26911409..26912635retrotransposon protein, putative, unclassified
LOC_Os02g44470Os.52855.1.S1_at11/112+26914037..26916159Actin-depolymerizing factor, putative, expressed
LOC_Os02g44480Os.51892.1.S1_at11/112+26916643..26918340pentatricopeptide, putative
LOC_Os02g44490Os.52714.1.S1_at10/112+26918848..26921304C2 domain containing protein, expressed
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004602molecular_functionglutathione peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4833.1.S1_at--849--9071Chr02:26925448..26925472 (25 bp)
TGCTTTCCCATGCAACCAGTTTGGT
LOC_Os02g44500
Os.4833.1.S1_at--129--3211Chr02:26925526..26925550 (25 bp)
CAAGGCCGAGTATCCAATTTTTGAT
LOC_Os02g44500
Os.4833.1.S1_at--730--1971Chr02:26925985..26926009 (25 bp)
ACTGCACCCATCTACAAGTTTCTGA
LOC_Os02g44500
Os.4833.1.S1_at--357--6631Chr02:26926087..26926111 (25 bp)
GTTGTGGAGCGCTATGCGCCAACTA
LOC_Os02g44500
Os.4833.1.S1_at--287--1991Chr02:26926285..26926309 (25 bp)
ACTGCTGCGTTGCATTGAGCACTTG
LOC_Os02g44500
Os.4833.1.S1_at--606--8771Chr02:26926352..26926376 (25 bp)
TGTATTTTCATTTGCGTAGCCCTGC
LOC_Os02g44500
Os.4833.1.S1_at--1119--2231Chr02:26926408..26926432 (25 bp)
AAATTGGCTTACTGCATCACTTTGC
LOC_Os02g44500
Os.4833.1.S1_at--175--371Chr02:26926423..26926447 (25 bp)
ATCACTTTGCCCCTTTATTGAAATA
LOC_Os02g44500
Os.4833.1.S1_at--546--471Chr02:26926450..26926474 (25 bp)
ATCTCCTGTATCTGTGTTCGTTATT
LOC_Os02g44500
Os.4833.1.S1_at--695--4031Chr02:26926468..26926492 (25 bp)
CGTTATTGAGACCTGCGACTGCGAT
LOC_Os02g44500
Os.4833.1.S1_at--453--9811Chr02:26926510..26926534 (25 bp)
TAACGTGTACTCGTTCTATCTGTGC
LOC_Os02g44500
Target Sequence 
TGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCA
AGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACAAGTTTCTGAAGTCCAGC
AAAGGTGGTCTTTTCGGTGACAATATCAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCG
CTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCG
GCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTG
CTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTT
GCCCCTTTATTGAAATATTATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTGCGATGAGCAAGTTTTGACGTGT
AACGTGTACTCGTTCTATCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis