Browse Element(s) Details


Os.5900.1.S1_at

Description gb:AK059298.1
DB_XREF= gi:32969316
TID=Os.5900.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E12, full insert sequence.
FL= gb:AK059298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4451010/11UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44460NANA2+26911409..26912635retrotransposon protein, putative, unclassified
LOC_Os02g44470Os.52855.1.S1_at11/112+26914037..26916159Actin-depolymerizing factor, putative, expressed
LOC_Os02g44480Os.51892.1.S1_at11/112+26916643..26918340pentatricopeptide, putative
LOC_Os02g44490Os.52714.1.S1_at10/112+26918848..26921304C2 domain containing protein, expressed
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0016051biological_processcarbohydrate biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0003980molecular_functionUDP-glucose:glycoprotein glucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5900.1.S1_at--596--691Chr02:26945045..26945069 (25 bp)
ATGAGCTATGATACACCAGCCGCTT
LOC_Os02g44510
Os.5900.1.S1_at--399--8231Chr02:26945074..26945098 (25 bp)
GGCAAGGATTCTTCACACTGACTGT
LOC_Os02g44510
Os.5900.1.S1_at--791--6711Chr02:26945100..26945124 (25 bp)
GTTCTCTGGTGTCCCAGCAGTTAAA
LOC_Os02g44510
Os.5900.1.S1_at--687--811Chr02:26945198..26945222 (25 bp)
ATGGTGGTGCCATTTTGCATTTTGT
LOC_Os02g44510
Os.5900.1.S1_at--58--10411Chr02:26945217..26945241 (25 bp)
TTTTGTAGGGCTAACTGCCGAAAAT
LOC_Os02g44510
Os.5900.1.S1_at--983--3311Chr02:26945295..26945319 (25 bp)
CACTGTAATCCCAATTCGTGTATTA
LOC_Os02g44510
Os.5900.1.S1_at--664--6731Chr02:26945324..26945348 (25 bp)
GTTCTTCCTGGGACGCTGTAAAGTT
LOC_Os02g44510
Os.5900.1.S1_at--782--10051Chr02:26945373..26945397 (25 bp)
TAGTATTAGCAATCTGGCAGCCCGA
LOC_Os02g44510
Os.5900.1.S1_at--797--3891Chr02:26945386..26945410 (25 bp)
CTGGCAGCCCGAGAATTTTGTAAAA
LOC_Os02g44510
Os.5900.1.S1_at--902--6611Chr02:26945411..26945435 (25 bp)
GTTGGCACCCAACAAAGCTCGAGAA
LOC_Os02g44510
Os.5900.1.S1_at--300--10091NONE
TAGGAATTTCGAAAGACGCACCAGA
NONE
Target Sequence 
ATGAGCTATGATACACCAGCCGCTTTGGAGGCAAGGATTCTTCACACTGACTGTAGTTCTCTGGTGTCCCAGCAGTTAAA
ATCATATTGCTGGTTCAGGGGGCAATGAAGTGCANATACCATAATGTGCGAATCAATCGATGATCAATAATCAATGGTGG
TGCCATTTTGCATTTTGTAGGGCTAACTGCCGAAAATAGGTTCACGAAGGGGTCTAGTTGGTAGTTTTTCAAGAACTTGT
ATACATAGAACACTGTAATCCCAATTCGTGTATTAAGATGTTCTTCCTGGGACGCTGTAAAGTTTATTGGCAACTGCCAG
TTGAAAGCTAGTATTAGCAATCTGGCAGCCCGAGAATTTTGTAAAAGTTGGCACCCAACAAAGCTCGAGAATGTNAGATA
CTTTGGTGTTGGTATTCCAAAANCATTTGTAGTTTGTGTATTTGATACGTGGAAATTTGATGCTCATTTTTCTAAGATAG
GAATTTCGAAAGACGCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis