Browse Element(s) Details


Os.27950.1.S2_a_at

Description gb:AK067099.1
DB_XREF= gi:32977117
TID=Os.27950.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096M07, full insert sequence.
FL= gb:AK103515.1 gb:AK067099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4452010/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44520Os.27950.1.S1_a_at11/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44520Os.27950.1.S2_a_at10/112+26947029..26964381Subtilase family protein, expressed
LOC_Os02g44530OsAffx.24723.1.S1_at11/112+26970100..26972364expressed protein
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005737cellular_componentcytoplasm
GO:0004289molecular_functionsubtilase activity
GO:0016806molecular_functiondipeptidyl-peptidase and tripeptidyl-peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27950.1.S2_a_at--132--6011Chr02:26962560..26962584 (25 bp)
GAGACCAGTTGGCTGATGCACTATA
LOC_Os02g44520
Os.27950.1.S2_a_at--702--2411Chr02:26963183..26963207 (25 bp)
AAAATACGGCTCTTTAACTGTCCTG
LOC_Os02g44520
Os.27950.1.S2_a_at--1118--9791Chr02:26963197..26963221 (25 bp)
TAACTGTCCTGCGTGAGAGGCGCTG
LOC_Os02g44520
Os.27950.1.S2_a_at--1115--10851NONE
TTGGCACTGCATTGAAGGTTCTGAA
NONE
Os.27950.1.S2_a_at--87--991Chr02:26964112..26964136 (25 bp)
AGGATGGGTCCATGTATCGGCCTAC
LOC_Os02g44520
Os.27950.1.S2_a_at--567--9451Chr02:26964128..26964152 (25 bp)
TCGGCCTACGAGAAGCAGTGGATGC
LOC_Os02g44520
Os.27950.1.S2_a_at--329--4331Chr02:26964167..26964191 (25 bp)
CCATCTTTGCCTCCGTTTTAATTGT
LOC_Os02g44520
Os.27950.1.S2_a_at--636--10091Chr02:26964192..26964216 (25 bp)
TAGGACTATTTTTCACTCATTTTTC
LOC_Os02g44520
Os.27950.1.S2_a_at--229--3591Chr02:26964209..26964233 (25 bp)
CATTTTTCATCACCATGGATTCAGT
LOC_Os02g44520
Os.27950.1.S2_a_at--496--3631Chr02:26964266..26964290 (25 bp)
CTTGCTGGTTTGGTAGTTTTTCACT
LOC_Os02g44520
Os.27950.1.S2_a_at--1116--9751Chr02:26964317..26964341 (25 bp)
TAAGAACTTAAGAAGGCTGCCTGCT
LOC_Os02g44520
Target Sequence 
GAGACCAGTTGGCTGATGCACTATACCAAAAGGGTCTTTCATTGGCAGAGATTGAGTCGCTAAAGACTGATGAGTCAACT
GAGGCATCTGCTAAAGATGTTTTTGAAGAGAATTACAAAGAATTAATTAAATGGGTTGATGCCAAAACTACAAAATACGG
CTCTTTAACTGTCCTGCGTGAGAGGCGCTGTGGAAGACTTGGCACTGCATTGAAGGTTCTGAATGACATGATTCAAGATG
ACTCTGAGCAACCAAAGAAAAGACTTTATGATTTGAAGATCCAATTGATTGAGGAGATAGGATGGGTCCATGTATCGGCC
TACGAGAAGCAGTGGATGCATGTCCGATTTCCCCCATCTTTGCCTCCGTTTTAATTGTTAGGACTATTTTTCACTCATTT
TTCATCACCATGGATTCAGTATTTTACTATTTTTGTCATTGTTGGTAGCAAACTTGCTGGTTTGGTAGTTTTTCACTAGG
TATTTTATTTCTTCAAATGGTAATAAGAACTTAAGAAGGCTGCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27950.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis