Browse Element(s) Details


OsAffx.24724.1.S1_x_at

Description tigr:9630.m04316
TID=OsAffx.24724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase homolog F4I18.11 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4460011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24724.1.S1_x_at--74--10511Chr02:27022046..27022070 (25 bp)
TTCAAACTCGTGTTGGGATGGATGT
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--827--2091Chr02:27022098..27022122 (25 bp)
ACATCGCGGCGGACGGGTTCACGTA
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--1043--7851Chr02:27022113..27022137 (25 bp)
GGTTCACGTACGAAGCCGAGGCCAT
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--584--7532Chr02:27022243..27022267 (25 bp)
GTGGCAGCAACAGCGTCAACGGCAT
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--396--8111Chr02:27022282..27022306 (25 bp)
GGACGACGACTGTACATGAGCAATC
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--956--5951Chr02:27022299..27022323 (25 bp)
GAGCAATCTCTCATCAATCATCACT
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--674--3071Chr02:27022314..27022338 (25 bp)
AATCATCACTCACCGCAGTTGATAT
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--56--1251Chr02:27022330..27022354 (25 bp)
AGTTGATATCCTCCATACCTGGCGC
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--645--7251Chr02:27022363..27022387 (25 bp)
GTCCTGACTGTAGATCCTGCACATA
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--88--10611Chr02:27022461..27022485 (25 bp)
TTCGTCTTTTGTGCTCGTTAATTTG
LOC_Os02g44600
OsAffx.24724.1.S1_x_at--366--6531Chr02:27022485..27022509 (25 bp)
GATTTGCGATTTCCGCTGTGGAGTA
LOC_Os02g44600
Target Sequence 
TTCAAACTCGTGTTGGGATGGATGTGAAAGCAGGAGGAGATGAACGATCCCCACATCGCGGCGGACGGGTTCACGTACGA
AGCCGAGGCCATCAAGGGGTGGCTCGACAGCGGCCACGACACGTCGCCGATGACGAACCTGACGCTCGAGCACCGCGAGC
TCATCCCGAACAGGGCGCTCCGCTCGGCCATCCTCGAGTGGCAGCAACAGCGTCAACGGCATCAGCCGCAAGAGGAGGAC
GACGACTGTACATGAGCAATCTCTCATCAATCATCACTCACCGCAGTTGATATCCTCCATACCTGGCGCTTCGCTTCGTC
CTGACTGTAGATCCTGCACATACATTAGCATTAGCTTTGCTTGGGTTGAAATTTGAAGATCCAAGATTGCTCGAGAAAAG
GGGAAGTTTACCCTGTTCGTCTTTTGTGCTCGTTAATTTGATTTGCGATTTCCGCTGTGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24724.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis