Browse Element(s) Details


Os.55089.1.S1_at

Description gb:AK107463.1
DB_XREF= gi:32992672
TID=Os.55089.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A08, full insert sequence.
FL= gb:AK107463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4467011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55089.1.S1_at--237--3831Chr02:27067735..27067759 (25 bp)
CTGCCGCCGCTGAACGTGAAGAGGA
LOC_Os02g44670
Os.55089.1.S1_at--765--10451Chr02:27067879..27067903 (25 bp)
TTCCGGTACGGCTTGGTGAGGACAC
LOC_Os02g44670
Os.55089.1.S1_at--814--951Chr02:27067897..27067921 (25 bp)
AGGACACGGCGCTACAAGTTGCGCG
LOC_Os02g44670
Os.55089.1.S1_at--223--5911Chr02:27067959..27067983 (25 bp)
GAGCTCGTTCGATCGGGTGAACTGC
LOC_Os02g44670
Os.55089.1.S1_at--987--8971Chr02:27067976..27068000 (25 bp)
TGAACTGCCACGTCCATATCTGAGT
LOC_Os02g44670
Os.55089.1.S1_at--118--8351Chr02:27068008..27068032 (25 bp)
GGCGGCGCGTTCACGACTGAATGCA
LOC_Os02g44670
Os.55089.1.S1_at--316--8751Chr02:27068041..27068065 (25 bp)
TGTACACATCTTGCGTGTTTTCTCT
LOC_Os02g44670
Os.55089.1.S1_at--564--7431Chr02:27068055..27068079 (25 bp)
GTGTTTTCTCTCTGCTTTGAGGATT
LOC_Os02g44670
Os.55089.1.S1_at--966--3091Chr02:27068109..27068133 (25 bp)
AATACTGGTTTGTGACATTTCTTCA
LOC_Os02g44670
Os.55089.1.S1_at--230--10371Chr02:27068160..27068184 (25 bp)
TTTTCTTCGGTGTGTACATGCGTAT
LOC_Os02g44670
Os.55089.1.S1_at--1107--4631Chr02:27068179..27068203 (25 bp)
GCGTATTTCTCCAGCATCTAATTTG
LOC_Os02g44670
Target Sequence 
CTGCCGCCGCTGAACGTGAAGAGGATCGACGTGGCCGCGCCCGCCGTGAGGGCGGCGCTGCCGCGGGGCGTGGAGGCGAC
CGTGAAGAAGGACAGGTCCGACGGGAAGCTGCCGGTGGACGTGCACATCAAGGGCAAGGTGCGGTTCCGGTACGGCTTGG
TGAGGACACGGCGCTACAAGTTGCGCGCGAGCTGCTCGCCGGTGGTCGTCGACTTCTCGTCGCCGAGCTCGTTCGATCGG
GTGAACTGCCACGTCCATATCTGAGTGCGCGCCGGCGGCGCGTTCACGACTGAATGCATGGCAAATTGTACACATCTTGC
GTGTTTTCTCTCTGCTTTGAGGATTTGTTTGTGTTTGGATTGATTCGGTTGTTAAATACTGGTTTGTGACATTTCTTCAC
TTGTATTATTCATTTTTTTAATATTTTTTCTTCGGTGTGTACATGCGTATTTCTCCAGCATCTAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis