Browse Element(s) Details


Os.14092.1.S1_at

Description gb:BI305883
DB_XREF= gi:14981205
DB_XREF=NL_2_D07
CLONE=NL_2_D07
TID=Os.14092.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14092 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4471010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14092.1.S1_at--349--10191NONE
TATTATACCACGTAGATGGCGTCGT
NONE
Os.14092.1.S1_at--834--851Chr02:27086350..27086374 (25 bp)
ATGGCGTCGTTAGTGATGGTTAATC
LOC_Os02g44710
Os.14092.1.S1_at--647--971Chr02:27086312..27086336 (25 bp)
AGGTTGGGTTTTGATCACTGCCTGC
LOC_Os02g44710
Os.14092.1.S1_at--100--8851Chr02:27086301..27086325 (25 bp)
TGATCACTGCCTGCTAAGTCTAAGT
LOC_Os02g44710
Os.14092.1.S1_at--178--3831Chr02:27086295..27086319 (25 bp)
CTGCCTGCTAAGTCTAAGTGGTAGA
LOC_Os02g44710
Os.14092.1.S1_at--499--6271Chr02:27086272..27086296 (25 bp)
GATGTACTTGTACAGCGCTCTTGAT
LOC_Os02g44710
Os.14092.1.S1_at--648--1651Chr02:27086259..27086283 (25 bp)
AGCGCTCTTGATTTGTTCCCGGTTA
LOC_Os02g44710
Os.14092.1.S1_at--921--6511Chr02:27086250..27086274 (25 bp)
GATTTGTTCCCGGTTACTGTTGAGG
LOC_Os02g44710
Os.14092.1.S1_at--586--2551Chr02:27086127..27086151 (25 bp)
AACTGCTCCTGATGGTGTTTGAGTG
LOC_Os02g44710
Os.14092.1.S1_at--1147--8931Chr02:27086104..27086128 (25 bp)
TGACTGTGAGAGTGATTCAGCGAGT
LOC_Os02g44710
Os.14092.1.S1_at--376--3851Chr02:27086026..27086050 (25 bp)
CTGCAGCTGATGTAAAATGGTTAAT
LOC_Os02g44710
Target Sequence 
TATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATTAAGGTTGGGTTTTGATCACTGCCTGCTA
AGTCTAAGTGGTAGATGTACTTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCN
NCCCCANTGAGTTTGTGCATTTTTTNTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCANT
GCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGG
CACTGTAAAAGTTTTTACTGCCNCTGCAGCTGATGTAAAATGGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis