Browse Element(s) Details


Os.5310.3.A1_at

Description gb:AK073500.1
DB_XREF= gi:32983523
TID=Os.5310.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044J15, full insert sequence.
FL= gb:AK073500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4474010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5310.3.A1_at--244--8451NONE
GGCCACATGGCGGAGTTCTATCAGC
NONE
Os.5310.3.A1_at--31--8091Chr02:27100389..27100413 (25 bp)
GGAGCTGCACAGCAAGCCCAACAAC
LOC_Os02g44740
Os.5310.3.A1_at--224--3351Chr02:27100171..27100195 (25 bp)
CACGGGCCCTTGCATTCAGACGCTG
LOC_Os02g44740
Os.5310.3.A1_at--554--9651Chr02:27100156..27100180 (25 bp)
TCAGACGCTGCGTCGATACCGTGGG
LOC_Os02g44740
Os.5310.3.A1_at--97--6491Chr02:27100142..27100166 (25 bp)
GATACCGTGGGCGTGGATTGTTAAT
LOC_Os02g44740
Os.5310.3.A1_at--743--8571Chr02:27100129..27100153 (25 bp)
TGGATTGTTAATTGGAAGCTCTGAA
LOC_Os02g44740
Os.5310.3.A1_at--139--8191Chr02:27100116..27100140 (25 bp)
GGAAGCTCTGAAACTAGACTTCTGG
LOC_Os02g44740
Os.5310.3.A1_at--1127--6471Chr02:27100086..27100110 (25 bp)
GTAGTAGTATTGGTAACACGAGGTA
LOC_Os02g44740
Os.5310.3.A1_at--950--6111Chr02:27100067..27100091 (25 bp)
GAGGTAAAATCCAATCCGTTGTAAT
LOC_Os02g44740
Os.5310.3.A1_at--585--6651Chr02:27100033..27100057 (25 bp)
GTTGATGCTAACAGTAATCCTGCTA
LOC_Os02g44740
Os.5310.3.A1_at--399--2451Chr02:27100024..27100048 (25 bp)
AACAGTAATCCTGCTAATTCTAGAA
LOC_Os02g44740
Target Sequence 
GGCCACATGGCGGAGTTCTATCAGCCGCGGCGGAGCGGGCGCGTGGTGACGGTGTCCGTGGTGGGGAAGCAGGTGCCGCT
CTACGGCGCCGGCGCGGAGCTGCACAGCAAGCCCAACAACGGCCGCCTCGGCCCCGCGGTGGTGCCCGTCAGGATGGCCT
TCGTGCTGCGGGCGCGCGCCCACATCCTCGGCCTCCTCGTCCGCTCCAAGTTCTACCGCCGCGTCCTCTGCCGCCTCGAC
GTCCGCGAGGCAAGCCTCGGCAAGCCCGTCCACGGCGTCGCCGCCGACTGCGAGTACCACGACGGGAGGTGACCACGGGC
CCTTGCATTCAGACGCTGCGTCGATACCGTGGGCGTGGATTGTTAATTGGAAGCTCTGAAACTAGACTTCTGGGGGTGGT
AGTAGTATTGGTAACACGAGGTAAAATCCAATCCGTTGTAATGGAACAAGTGTTGATGCTAACAGTAATCCTGCTAATTC
TAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5310.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis