Browse Element(s) Details


OsAffx.24727.1.S1_at

Description tigr:9630.m04337
TID=OsAffx.24727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24727.1.S1_at--709--8371Chr02:27126711..27126735 (25 bp)
GGCGTCACCATCTGGCGAGCACCGG
LOC_Os02g44800
OsAffx.24727.1.S1_at--136--3371Chr02:27126706..27126730 (25 bp)
CACCATCTGGCGAGCACCGGATGCT
LOC_Os02g44800
OsAffx.24727.1.S1_at--446--491Chr02:27126702..27126726 (25 bp)
ATCTGGCGAGCACCGGATGCTCCCT
LOC_Os02g44800
OsAffx.24727.1.S1_at--128--6351Chr02:27126687..27126711 (25 bp)
GATGCTCCCTCAGCGGCAGTGGCAA
LOC_Os02g44800
OsAffx.24727.1.S1_at--158--1631Chr02:27126676..27126700 (25 bp)
AGCGGCAGTGGCAACACGGTCTTTG
LOC_Os02g44800
OsAffx.24727.1.S1_at--455--1091Chr02:27126670..27126694 (25 bp)
AGTGGCAACACGGTCTTTGCCCAGG
LOC_Os02g44800
OsAffx.24727.1.S1_at--218--5151Chr02:27126666..27126690 (25 bp)
GCAACACGGTCTTTGCCCAGGCCAG
LOC_Os02g44800
OsAffx.24727.1.S1_at--5--10691Chr02:27126654..27126678 (25 bp)
TTGCCCAGGCCAGCTCCAAGTCCGG
LOC_Os02g44800
OsAffx.24727.1.S1_at--149--1991Chr02:27126627..27126651 (25 bp)
ACTGCGGCGGCAGGCTGAATTGCAC
LOC_Os02g44800
OsAffx.24727.1.S1_at--819--8351Chr02:27126622..27126646 (25 bp)
GGCGGCAGGCTGAATTGCACCGTCC
LOC_Os02g44800
OsAffx.24727.1.S1_at--609--911Chr02:27126616..27126640 (25 bp)
AGGCTGAATTGCACCGTCCCTGGCA
LOC_Os02g44800
Target Sequence 
GGCGTCACCATCTGGCGAGCACCGGATGCTCCCTCAGCGGCAGTGGCAACACGGTCTTTGCCCAGGCCAGCTCCAAGTCC
GGCGACTGCGGCGGCAGGCTGAATTGCACCGTCCCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis