Browse Element(s) Details


Os.18321.3.S1_at

Description gb:AK111401.1
DB_XREF= gi:32996610
TID=Os.18321.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E03, full insert sequence.
FL= gb:AK111401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g447809/11Polyprenyl synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18321.3.S1_at--608--451Chr02:27116669..27116693 (25 bp)
ATCTACATCTCCACCAGAGTATCAG
LOC_Os02g44780
Os.18321.3.S1_at--458--6871Chr02:27116630..27116654 (25 bp)
GTATCAGACTCGACGAACGACGCAG
LOC_Os02g44780
Os.18321.3.S1_at--801--3391Chr02:27116589..27116613 (25 bp)
CAGCTTCACGGCAAGGGTCGTTGGT
LOC_Os02g44780
Os.18321.3.S1_at--532--2391Chr02:27116485..27116509 (25 bp)
AAACTCTTTATCTCTGTATCTACGT
LOC_Os02g44780
Os.18321.3.S1_at--1133--131Chr02:27116434..27116458 (25 bp)
ATTACATACTGCACCAACTACCAAG
LOC_Os02g44780
Os.18321.3.S1_at--926--6811Chr02:27116367..27116391 (25 bp)
GTTTTTACATGCTATCCACTACTTG
LOC_Os02g44780
Os.18321.3.S1_at--906--6771Chr02:27116336..27116360 (25 bp)
GTTACCAAGCTCTTGCAGCGCAGAA
LOC_Os02g44780
Os.18321.3.S1_at--556--1431Chr02:27116315..27116339 (25 bp)
AGAACACTTGCTAGTTGCCACCAGG
LOC_Os02g44780
Os.18321.3.S1_at--73--3491Chr02:27116294..27116318 (25 bp)
CAGGATCTTGCAGCTCAAACTCGAT
LOC_Os02g44780
Os.18321.3.S1_at--748--9251NONE
TCCTCTCTATAATCTCATCAACCTT
NONE
Os.18321.3.S1_at--961--2631Chr02:27114065..27114089 (25 bp)
AACCTTTTCATGTTCCAAGCTGAGA
NONE
Target Sequence 
ATCTACATCTCCACCAGAGTATCAGATACAAAAACCAGAGTATCAGACTCGACGAACGACGCAGCAGGCCATTGGCCTCG
CAGCTTCACGGCAAGGGTCGTTGGTTGCCTGGGCTAGCCGTCGGAATCAGAAATAGGAGTTCACCCATTGAACTTTTNTA
TNACTGCTTTCACCATTTGGAATGAAAACTCTTTATCTCTGTATCTACGTTATCCATCAACTACACAGCACCAGTAATTA
CATACTGCACCAACTACCAAGTGATGATGGCTTCAAGCACACTAACAATAACAACCATTGCTAGTTTTTACATGCTATCC
ACTACTTGCTAGTTGTTACCAAGCTCTTGCAGCGCAGAACACTTGCTAGTTGCCACCAGGATCTTGCAGCTCAAACTCGA
TCAAAGGCATTTCCTCCTCTCTATAATCTCATCAACCTTTTCATGTTCCAAGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18321.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis