Browse Element(s) Details


Os.9636.1.S1_s_at

Description gb:AU085895
DB_XREF= gi:7332549
DB_XREF=AU085895
CLONE=E2296
TID=Os.9636.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9636 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564112.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4481011/11tRNA pseudouridine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016439molecular_functiontRNA-pseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9636.1.S1_s_at--1076--8071Chr02:27130374..27130398 (25 bp)
GGAGCTGTAGCTCTCTGGTTGCATT
LOC_Os02g44810
Os.9636.1.S1_s_at--908--4791Chr02:27130383..27130407 (25 bp)
GCTCTCTGGTTGCATTCGTTGAACA
LOC_Os02g44810
Os.9636.1.S1_s_at--601--2251Chr02:27130412..27130436 (25 bp)
AAATTATCCAGATTTTCGCTACATG
LOC_Os02g44810
Os.9636.1.S1_s_at--43--9271Chr02:27130427..27130451 (25 bp)
TCGCTACATGGATAATGCTGGAACT
LOC_Os02g44810
Os.9636.1.S1_s_at--780--8171Chr02:27130446..27130470 (25 bp)
GGAACTGAGGCAAGTATTGCTGCTG
LOC_Os02g44810
Os.9636.1.S1_s_at--637--5751Chr02:27130493..27130517 (25 bp)
GACGGTGCCAAGTGATAATATTAGT
LOC_Os02g44810
Os.9636.1.S1_s_at--510--2511Chr02:27130539..27130563 (25 bp)
AACTTGTAGGACACAGTACTTCTGT
LOC_Os02g44810
Os.9636.1.S1_s_at--1029--2051Chr02:27130556..27130580 (25 bp)
ACTTCTGTCTGTTGTATGTGTCTGG
LOC_Os02g44810
Os.9636.1.S1_s_at--155--3231Chr02:27130666..27130690 (25 bp)
CAAGTTGTGTAATGCTTCAGCGCTT
LOC_Os02g44810
Os.9636.1.S1_s_at--178--4911Chr02:27130679..27130703 (25 bp)
GCTTCAGCGCTTACATAGGCAGTGT
LOC_Os02g44810
Os.9636.1.S1_s_at--191--8271Chr02:27130696..27130720 (25 bp)
GGCAGTGTTTCCTTGGATGGACATT
LOC_Os02g44810
Target Sequence 
GGAGCTGTAGCTCTCTGGTTGCATTCGTTGAACANCAGAAATTATCCAGATTTTCGCTACATGGATAATGCTGGAACTGA
GGCAAGTATTGCTGCTGCAGTTGAGANTGTTGATGAAGGGACGGTGCCAAGTGATAATATTAGTGAGTNACTCTTTTCCC
AAAGGAACTTGTAGGACACAGTACTTCTGTCTGTTGTATGTGTCTGGAGAGAGGCTTTGAAATATTGCTTATGGAACCAA
GACTGNATTGAAGGCTGCATCTCTTTTNCATTGATATACGGGCATAAATAGTCAAGTTGTGTAATGCTTCAGCGCTTACA
TAGGCAGTGTTTCCTTGGATGGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9636.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis