Browse Element(s) Details


Os.50931.1.S1_at

Description gb:AK059531.1
DB_XREF= gi:32969549
TID=Os.50931.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D08, full insert sequence.
FL= gb:AK103585.1 gb:AK059531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4486011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50931.1.S1_at--1149--7631Chr02:27153141..27153165 (25 bp)
GGGAGCTCCCATGCCGTGGTGCAAA
LOC_Os02g44860
Os.50931.1.S1_at--647--2351Chr02:27153119..27153143 (25 bp)
AAAGCATCATGAAGCATCCCCAACG
LOC_Os02g44860
Os.50931.1.S1_at--1121--471Chr02:27153022..27153128 (25 bp)
ATCCCCAACGACTCGGATTCAAGGA
LOC_Os02g44860
Os.50931.1.S1_at--982--10491Chr02:27153005..27153029 (25 bp)
TTCAAGGAGGTCACGACGGCTTGCT
LOC_Os02g44860
Os.50931.1.S1_at--196--3651Chr02:27152829..27152853 (25 bp)
CTTCGCTGCGCCGATAAATTTCAGG
LOC_Os02g44860
Os.50931.1.S1_at--733--1371Chr02:27152778..27152802 (25 bp)
AGAGCGTGGCAGTGTCACCGTGTAA
LOC_Os02g44860
Os.50931.1.S1_at--1023--3291Chr02:27152746..27152770 (25 bp)
CTACTAATTGTTGTACGTCGCCGAC
LOC_Os02g44860
Os.50931.1.S1_at--295--6931Chr02:27152690..27152714 (25 bp)
GTAGGATATGCTGGGCTGTGTTCAT
LOC_Os02g44860
Os.50931.1.S1_at--880--451Chr02:27152611..27152635 (25 bp)
ATCTCCGTTATTATTGTTGCCCTTG
LOC_Os02g44860
Os.50931.1.S1_at--83--3131Chr02:27152550..27152574 (25 bp)
AATTTGAGCCTGGAGCGGATGAGCC
LOC_Os02g44860
Os.50931.1.S1_at--1108--5051Chr02:27152516..27152540 (25 bp)
GCAGCTGCTTACTTGGTGCCAAATC
LOC_Os02g44860
Target Sequence 
GGGAGCTCCCATGCCGTGGTGCAAAGCATCATGAAGCATCCCCAACGACTCGGATTCAAGGAGGTCACGACGGCTTGCTG
CGGCTCCGGCAAGTTCAACGGCGAGTCCGGGTGCACGCCGAACGCCACGCTGTGCGACAACCGGCACGACTACCTCNTCT
GGGACCTGCTGCACCCGACGCACGCCACGTCCAAGATCGCCGCCGCGGCCATATACAACGGCTCGNTCCGCTTCGCTGCG
CCGATAAATTTCAGGCAGCTGGTGGATGACCAGCACTAGCNAGAGCGTGGCAGTGTCACCGTGTAACGTAGTACTACTAA
TTGTTGTACGTCGCCGACNATGTGTCTGTTTGTCTGGNGATATTGGTGCGTAGGATATGCTGGGCTGTGTTCATCAGNGG
CTTGTGCTTTAGGCGGNGGTGTAGTTTNGATACACATACCAAAATGTCATCTCCGTTATTATTGTTGCCCTTGTTGGNNT
TTGCGGTGTTTGTGTTCCCAAGTCGGGATAATTTGAGCCTGGAGCGGATGAGCCAAGGACATCGCAGCTGCTTACTTGGT
GCCAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis