Browse Element(s) Details


Os.12167.1.S1_at

Description gb:AK070197.1
DB_XREF= gi:32980221
TID=Os.12167.1
CNT=47
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12167 (NCBI UniGene Cluster)
UG_TITLE=MRNA for LIP9, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full insert sequence.
FL= gb:AK070197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4487011/11Dehydrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009415biological_processresponse to water
GO:0009631biological_processcold acclimation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12167.1.S1_at--74--6431Chr02:27160013..27160037 (25 bp)
GATCATGGAGAAACTGCCCGGTTAC
LOC_Os02g44870
Os.12167.1.S1_at--266--4671Chr02:27159871..27159895 (25 bp)
GCGTGTGTTAGTTTGGTGCTTTTTC
LOC_Os02g44870
Os.12167.1.S1_at--1119--10571Chr02:27159849..27159873 (25 bp)
TTCTGCACTGCAGCTTTGTTAAGTT
LOC_Os02g44870
Os.12167.1.S1_at--1121--2791Chr02:27159818..27159842 (25 bp)
AAGATTGGTCAAGGCCTGGTCAGCG
LOC_Os02g44870
Os.12167.1.S1_at--224--3911Chr02:27159803..27159827 (25 bp)
CTGGTCAGCGAAGCCCGATCAGTGA
LOC_Os02g44870
Os.12167.1.S1_at--553--8231Chr02:27159696..27159720 (25 bp)
GGCACTCTTGTATTGGTTTTGGGCT
LOC_Os02g44870
Os.12167.1.S1_at--329--4711Chr02:27159674..27159698 (25 bp)
GCTGGGCATTCTGCCTTGGTATTAA
LOC_Os02g44870
Os.12167.1.S1_at--247--7871Chr02:27159657..27159681 (25 bp)
GGTATTAATGATTTCTGCCCAGAAT
LOC_Os02g44870
Os.12167.1.S1_at--1128--211Chr02:27159632..27159656 (25 bp)
ATATTGTTGCCTTGTACAGTTGTAC
LOC_Os02g44870
Os.12167.1.S1_at--95--1251Chr02:27159615..27159639 (25 bp)
AGTTGTACTGTACTACTCTACTGGG
LOC_Os02g44870
Os.12167.1.S1_at--837--7691Chr02:27159592..27159616 (25 bp)
GGGTACACTGCATTGTGATCACATT
LOC_Os02g44870
Target Sequence 
GATCATGGAGAAACTGCCCGGTTACCACAAGGGCTCCGGCGAGGAAGACAAGACCGCCGCCGCCGCCACCGGCGAGCACA
AGAGCAGCGCTTAATTGGGGCGTGTGTGAGACCAGGCCATGGTTGGAATTTGGAAGTGTTTGGCGTGTGTTAGTTTGGTG
CTTTTTCTGCACTGCAGCTTTGTTAAGTTCGTGTCAAGATTGGTCAAGGCCTGGTCAGCGAAGCCCGATCAGTGATCGAA
GTTTGTGTTTCGTGTGGGGTACGGGCTTCAGTTTGCTATAGTCAAGTACTAGATGTTGAGTTTGTTTAATTATTATTGGC
ACTCTTGTATTGGTTTTGGGCTGGGCATTCTGCCTTGGTATTAATGATTTCTGCCCAGAATATATTGTTGCCTTGTACAG
TTGTACTGTACTACTCTACTGGGGTACACTGCATTGTGATCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis