Browse Element(s) Details


Os.36087.1.A1_at

Description gb:AK064519.1
DB_XREF= gi:32974537
TID=Os.36087.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F10, full insert sequence.
FL= gb:AK064519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36087.1.A1_at--208--4491Chr02:27182459..27182483 (25 bp)
GCCGGTGACTGATCAGTTTTGACCA
LOC_Os02g44890
Os.36087.1.A1_at--952--8911Chr02:27182440..27182464 (25 bp)
TGACCATCCAAGAGACGGACTGCTT
LOC_Os02g44890
Os.36087.1.A1_at--442--9711Chr02:27182416..27182440 (25 bp)
TCAAAAGGTCCAGATCAGTCCCCAG
LOC_Os02g44890
Os.36087.1.A1_at--64--1151Chr02:27182400..27182424 (25 bp)
AGTCCCCAGGGCGAGCAACATGCAT
LOC_Os02g44890
Os.36087.1.A1_at--808--7371Chr02:27182371..27182395 (25 bp)
GTGACCCAATAACTGCATCTTCTAT
LOC_Os02g44890
Os.36087.1.A1_at--30--8751Chr02:27182308..27182332 (25 bp)
TGTAGTGTTACTGTTGTTCCCGCAT
LOC_Os02g44890
Os.36087.1.A1_at--526--5151Chr02:27182270..27182294 (25 bp)
GCAACAGTATGCTCGTTTTGTGATG
LOC_Os02g44890
Os.36087.1.A1_at--807--271Chr02:27182242..27182266 (25 bp)
ATAGGAGTAACTTCTTGCGCTGCGC
LOC_Os02g44890
Os.36087.1.A1_at--603--6031Chr02:27182216..27182240 (25 bp)
GAGATGATTCGCTGCTGTCGGATGC
LOC_Os02g44890
Os.36087.1.A1_at--778--4771Chr02:27182206..27182230 (25 bp)
GCTGCTGTCGGATGCTGTCTATTAT
LOC_Os02g44890
Os.36087.1.A1_at--748--4731Chr02:27182193..27182217 (25 bp)
GCTGTCTATTATGCATGTCTGAAAT
LOC_Os02g44890
Target Sequence 
GCCGGTGACTGATCAGTTTTGACCATCCAAGAGACGGACTGCTTCAAAAGGTCCAGATCAGTCCCCAGGGCGAGCAACAT
GCATTGGTGTGACCCAATAACTGCATCTTCTATGTAAATATTTTTTTTGAGAACTTTCTATGCAAAGATTCTGTAGTGTT
ACTGTTGTTCCCGCATCCTGACCCACCCAGCAACAGTATGCTCGTTTTGTGATGTGTATAGGAGTAACTTCTTGCGCTGC
GCGGAGATGATTCGCTGCTGTCGGATGCTGTCTATTATGCATGTCTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36087.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis