Browse Element(s) Details


Os.24379.1.A1_at

Description gb:AK064019.1
DB_XREF= gi:32974037
TID=Os.24379.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H12, full insert sequence.
FL= gb:AK064019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4490010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24379.1.A1_at--916--10071Chr02:27201429..27201453 (25 bp)
TAGGCATTGGCATAGAGGTTCCATC
LOC_Os02g44900
Os.24379.1.A1_at--1104--6151Chr02:27201443..27201467 (25 bp)
GAGGTTCCATCTGACACTACAGTGA
LOC_Os02g44900
Os.24379.1.A1_at--40--2451Chr02:27201479..27201503 (25 bp)
AAAATACAAGGGTCTCCTCTCCAGG
LOC_Os02g44900
Os.24379.1.A1_at--552--7171Chr02:27201490..27201514 (25 bp)
GTCTCCTCTCCAGGTGGTTATAATT
LOC_Os02g44900
Os.24379.1.A1_at--744--731Chr02:27201532..27201556 (25 bp)
ATGTTCTGGGCAAATGCTGCTTGCA
LOC_Os02g44900
Os.24379.1.A1_at--1139--5331Chr02:27201574..27201598 (25 bp)
GAAGTTCTGACTTTGGAGTTTTGCT
LOC_Os02g44900
Os.24379.1.A1_at--947--6051Chr02:27201589..27201613 (25 bp)
GAGTTTTGCTAACTGACCGTTGTTT
LOC_Os02g44900
Os.24379.1.A1_at--393--1791Chr02:27201604..27201628 (25 bp)
ACCGTTGTTTGTCGATGCAGTTCAG
LOC_Os02g44900
Os.24379.1.A1_at--833--5131Chr02:27201629..27201653 (25 bp)
GCAAATGTCCTGTGTTGATCCATCA
LOC_Os02g44900
Os.24379.1.A1_at--302--10351Chr02:27201755..27201779 (25 bp)
TTTTTCTTGGCCTCCATACAATTGA
LOC_Os02g44900
Os.24379.1.A1_at--783--6651NONE
GTTGAATGCAGTTCGCGGCGTTGTA
NONE
Target Sequence 
TAGGCATTGGCATAGAGGTTCCATCTGACACTACAGTGAACACAGCTTGTAAAATACAAGGGTCTCCTCTCCAGGTGGTT
ATAATTTATCAGATCAATGCAGAATGTTCTGGGCAAATGCTGCTTGCAGATCAAATTTTTGTGGGGAAGTTCTGACTTTG
GAGTTTTGCTAACTGACCGTTGTTTGTCGATGCAGTTCAGGCAAATGTCCTGTGTTGATCCATCATAATAGATATAGTTG
TGTTGAAGTAGCAGGTACATTAGGTACATATAGGTGAANTGCTCGTTNCGGTGCTAGTATGCAATGTACTGATNTTCTGT
GTTGCCTTTTTCTTGGCCTCCATACAATTGAATGAATGAGCAAGAGTGCNCTTGGAATGAATGTGCAACTGTGCAAGAGT
TGAAAGAGTTGAATGCAGTTCGCGGCGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24379.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis