Browse Element(s) Details


Os.7523.1.S1_at

Description gb:AB079636.1
DB_XREF= gi:18700442
GEN=OsHMGB2
TID=Os.7523.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7523 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high mobility group box protein 2, complete cds.
PROD=high mobility group box protein 2
FL= gb:AB079636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4493011/11HMG1/2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7523.1.S1_at--977--9071Chr02:27219778..27219937 (25 bp)
TGCTTTCTTCGTCTTCATGTCTGAG
LOC_Os02g44930
Os.7523.1.S1_at--1074--10611Chr02:27219785..27219944 (25 bp)
TTCGTCTTCATGTCTGAGTTCAGGC
LOC_Os02g44930
Os.7523.1.S1_at--141--10531Chr02:27219938..27219962 (25 bp)
TTCAGGCAGGAGTACCAGGCAGCGC
LOC_Os02g44930
Os.7523.1.S1_at--399--931Chr02:27219954..27219978 (25 bp)
AGGCAGCGCATCCTGACAACAAGAG
LOC_Os02g44930
Os.7523.1.S1_at--108--2211Chr02:27219969..27219993 (25 bp)
ACAACAAGAGTGTCGCCGCCGTGAG
LOC_Os02g44930
Os.7523.1.S1_at--267--5331Chr02:27220099..27220123 (25 bp)
GAAGTGGCGAGCTATGTCTGAGCAA
LOC_Os02g44930
Os.7523.1.S1_at--186--1751Chr02:27220424..27220448 (25 bp)
ACCTTATGTGGACAAGGCTGGCCAA
LOC_Os02g44930
Os.7523.1.S1_at--1107--2751Chr02:27220467..27220491 (25 bp)
AAGACCAAGGCCAACTTCGATAAGA
LOC_Os02g44930
Os.7523.1.S1_at--83--5611Chr02:27220629..27220653 (25 bp)
GACAAGTCCAAGTCTGAGGTCGACG
LOC_Os02g44930
Os.7523.1.S1_at--1142--6931Chr02:27220834..27220858 (25 bp)
GTAGCAAACTGTGTCTTAGGTCCCC
LOC_Os02g44930
Os.7523.1.S1_at--297--10071Chr02:27220850..27220874 (25 bp)
TAGGTCCCCTATTAGCTTTACTAGT
LOC_Os02g44930
Target Sequence 
TGCTTTCTTCGTCTTCATGTCTGAGTTCAGGCAGGAGTACCAGGCAGCGCATCCTGACAACAAGAGTGTCGCCGCCGTGA
GCAAGGCTGCAGGGGAGAAGTGGCGAGCTATGTCTGAGCAAGAGAAGGCACCTTATGTGGACAAGGCTGGCCAAAAGAAG
CAGGACTACGAGAAGACCAAGGCCAACTTCGATAAGAAGGAGAGCACAAGCTCAAAGAAAGCTAAGACCCATGATGATNG
NGAANGGCTCTGACAAGTCCAAGTCTGAGGTCGACGATGACCAGGATGGTGGTAGCGATGAGGAAAATGAGGACGATGAA
GAGTAAATAGTGTATCCGGGGGCATGAGGTAGCAAACTGTGTCTTAGGTCCCCTATTAGCTTTACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis