Browse Element(s) Details


Os.26517.1.S1_at

Description gb:AK100120.1
DB_XREF= gi:32985329
TID=Os.26517.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007K16, full insert sequence.
FL= gb:AK100120.1 gb:AK109758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4499011/11F-box domain containing protein, expressed
LOC_Os01g431201/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g45000Os.6760.1.A1_at11/112+27256101..27257629expressed protein
LOC_Os02g45010Os.54904.1.S1_at11/112+27260333..27263338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26517.1.S1_at--72--4671Chr02:27243606..27243630 (25 bp)
GCGGGCGGTTCTACGTCAACACAAA
LOC_Os02g44990
Os.26517.1.S1_at--300--8131Chr02:27243814..27243838 (25 bp)
GGACTACTACCTCAACGTGTATCAG
LOC_Os02g44990
Os.26517.1.S1_at--1071--3251Chr02:27243826..27243850 (25 bp)
CAACGTGTATCAGCTGCAGGAGGAC
LOC_Os02g44990
Os.26517.1.S1_at--559--6491Chr02:27243893..27243917 (25 bp)
GATAGCGTGCTCTTTTTCGACAAGC
LOC_Os02g44990
Os.26517.1.S1_at--352--2671Chr02:27243962..27243986 (25 bp)
AAGCGGGATTGCGTCTACTTCATGC
LOC_Os02g44990
Os.26517.1.S1_at--514--9871Chr02:27243977..27244001 (25 bp)
TACTTCATGCACGAGAAGCGGACAT
LOC_Os02g44990
Os.26517.1.S1_at--489--9871Chr02:27244019..27244043 (25 bp)
TACAGGTTCCTTTGTCGGTATAACA
LOC_Os02g44990
Os.26517.1.S1_at--1135--9371Chr02:27244059..27244083 (25 bp)
TCGATAGAGTTGTGTCGCTGCCCGA
LOC_Os02g44990
Os.26517.1.S1_at--75--3972Chr02:27244111..27244135 (25 bp)
CGGATTGTGCCCCTCTGAATAAGAT
LOC_Os02g44990
Os.26517.1.S1_at--651--5231Chr02:27244127..27244151 (25 bp)
GAATAAGATGTGTCCCGGCGATGTT
LOC_Os02g44990
Os.26517.1.S1_at--745--10552Chr02:27244168..27244192 (25 bp)
TTCTTGTAGTTTTTTCTCCTTGAAT
LOC_Os02g44990
Target Sequence 
GCGGGCGGTTCTACGTCAACACAAACGCGCAGGAGACGCTGGTGATCGACGCCTCCACCGGCGCCGTCGAGTCCGTCCTG
CCGCCGCCGCCACGCTCGGCCGACGCCGGTGCCGGCGTCTCCTGCGGGGACTACCTGGTGGAGTCGCGCGGGAAGCTGAT
CAGGGCCGTGCTGTTCCCGCGCGACGGCGTGGTGACCACGTCGGCCGAGGACTACTACCTCAACGTGTATCAGCTGCAGG
AGGACGGGAAGGCCGCCGCCGCGTGGGCCAAGGTGGAGAGCGTCGGGGATAGCGTGCTCTTTTTCGACAAGCACGGGCAC
GGGTTCTCGCTGGAGCCCAANGGCGCCGCGGAGCTGAAGCGGGATTGCGTCTACTTCATGCACGAGAAGCGGACATGGCT
GGACGCCGGGGAGTACAGGTTCCTTTGTCGGTATAACATGGAGACCGGAGAGGTCGATAGAGTTGTGTCGCTGCCCGACA
CGTTCGGGGACACCTGGGTTGTCCCCGGATTGTGCCCCTCTGAATAAGATGTGTCCCGGCGATGTTGTTGGTTTTTCGGT
GTTTCTTGTAGTTTTTTCTCCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis