Browse Element(s) Details


Os.54904.1.S1_at

Description gb:AK107063.1
DB_XREF= gi:32992272
TID=Os.54904.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E03, full insert sequence.
FL= gb:AK107063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4501011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g45000Os.6760.1.A1_at11/112+27256101..27257629expressed protein
LOC_Os02g45010Os.54904.1.S1_at11/112+27260333..27263338expressed protein
LOC_Os02g45020OsAffx.25936.1.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.7.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.2.S1_x_at4/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.5.S1_x_at2/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45030NANA2+27283475..27284062hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54904.1.S1_at--3--2491Chr02:27261981..27262217 (25 bp)
AACAGGAGACTGTCCCGGCAAGGAG
LOC_Os02g45010
Os.54904.1.S1_at--389--2051Chr02:27261687..27261711 (25 bp)
ACTTCAGCAAATCGTTTCGCCGTTT
LOC_Os02g45010
Os.54904.1.S1_at--466--5751Chr02:27261538..27261562 (25 bp)
GACGGATACAGCATCGGTACTGTTT
LOC_Os02g45010
Os.54904.1.S1_at--995--6871Chr02:27261502..27261526 (25 bp)
GTATATCAAGTTTCTGCACGAACAA
LOC_Os02g45010
Os.54904.1.S1_at--1068--4831Chr02:27260738..27260762 (25 bp)
GCTAAGTGAGCCGTACACGAACTCC
LOC_Os02g45010
Os.54904.1.S1_at--631--2211Chr02:27260579..27260628 (25 bp)
ACAAGCAGGGTAACAGCGTTCCATG
LOC_Os02g45010
Os.54904.1.S1_at--856--1871Chr02:27260523..27260547 (25 bp)
ACGATGGAGCATGACCTGAGGAATA
LOC_Os02g45010
Os.54904.1.S1_at--1034--3871Chr02:27260480..27260504 (25 bp)
CTGTCTCGTGGACGCCCGAAGTGTA
LOC_Os02g45010
Os.54904.1.S1_at--229--2871Chr02:27260462..27260486 (25 bp)
AAGTGTACCGGGATGGCAACGCGAT
LOC_Os02g45010
Os.54904.1.S1_at--828--6231Chr02:27260440..27260464 (25 bp)
GATGGACTACTGGACGCCGGCGTAC
LOC_Os02g45010
Os.54904.1.S1_at--540--4471Chr02:27260408..27260432 (25 bp)
GCCTGTACCGGTGACATCTAACTGA
LOC_Os02g45010
Target Sequence 
AACAGGAGACTGTCCCGGCAAGGAGTAGTAGCAGCGGCAGTGGAGCGGCGGCGACTGATCGTAAGAAGAGGAAGTCAGAG
GAAAGGCAGGAAAGCACTGTCAAGAAGTCCAAGCAAGAGGCTTCCAAAGCATCACCTCCTAAGCAACCAGTGCCTAAAGT
AAAGCTAGGGGAGAAGATCACAGCACTTCAGCAAATCGTTTCGCCGTTTGGGAAGACGGATACAGCATCGGTACTGTTTG
AAACGATCAAGTATATCAAGTTTCTGCACGAACAAGTACAGTTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAAC
AAGCAGGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGATGGAGCATGACCTGAGGAATAG
GGGGCTTTGCTTGGTGCCTGTCTCGTGGACGCCCGAAGTGTACCGGGATGGCAACGCGATGGACTACTGGACGCCGGCGT
ACCGGGGCTGCCTGTACCGGTGACATCTAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis