Browse Element(s) Details


Os.6760.1.A1_at

Description gb:CB682086
DB_XREF= gi:29685811
DB_XREF=OSJNEf08P20.r
CLONE=OSJNEf08P20
TID=Os.6760.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.6760 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196392.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g45000Os.6760.1.A1_at11/112+27256101..27257629expressed protein
LOC_Os02g45010Os.54904.1.S1_at11/112+27260333..27263338expressed protein
LOC_Os02g45020OsAffx.25936.1.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.7.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.2.S1_x_at4/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.5.S1_x_at2/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6760.1.A1_at--779--8791Chr02:27257056..27257080 (25 bp)
TGTTCGTCGATTCCCTCCACGGGTT
LOC_Os02g45000
Os.6760.1.A1_at--67--9011Chr02:27257149..27257173 (25 bp)
TGAATGATCGGCGTTCCACCACGGT
LOC_Os02g45000
Os.6760.1.A1_at--683--3931Chr02:27257157..27257181 (25 bp)
CGGCGTTCCACCACGGTGAAGTATA
LOC_Os02g45000
Os.6760.1.A1_at--750--3931Chr02:27257261..27257285 (25 bp)
CGGCGAGACGCCTTCCTGGATCATA
LOC_Os02g45000
Os.6760.1.A1_at--766--4431Chr02:27257270..27257294 (25 bp)
GCCTTCCTGGATCATACCAAGCTTG
LOC_Os02g45000
Os.6760.1.A1_at--728--91Chr02:27257345..27257369 (25 bp)
ATTCGTGATCGACAAATCTCTGCCT
LOC_Os02g45000
Os.6760.1.A1_at--547--2271Chr02:27257358..27257382 (25 bp)
AAATCTCTGCCTCGGTCTCGGTAAA
LOC_Os02g45000
Os.6760.1.A1_at--1151--4431Chr02:27257366..27257390 (25 bp)
GCCTCGGTCTCGGTAAATTCTTCGT
LOC_Os02g45000
Os.6760.1.A1_at--534--10191Chr02:27257507..27257531 (25 bp)
TATTTCTGAAACTATATCACCCACG
LOC_Os02g45000
Os.6760.1.A1_at--1090--231Chr02:27257520..27257544 (25 bp)
ATATCACCCACGAAGCTTAGTTTCC
LOC_Os02g45000
Os.6760.1.A1_at--111--1791Chr02:27257525..27257549 (25 bp)
ACCCACGAAGCTTAGTTTCCTCAGT
LOC_Os02g45000
Target Sequence 
TGTTCGTCGATTCCCTCCACGGGTTCGCCATGGAGACCGCGGGATTCGAGAACCTCGAGGGCAACACCATCTACTCCGTG
ACCACCAAGGAGGTGAATGATCGGCGTTCCACCACGGTGAAGTATAGCGTGTCGGTGTTCAGCCTGGAGCACCGGAGCTC
CAAGAAGCTCGCGTGCCGCCTCAACAAGCTGGAGATGGCCCTCCGCGGCGAGACGCCTTCCTGGATCATACCAAGCTTGA
ACGAAGGATGAACGGAATCAGAGATTGCCGGATTGGTGGTTCTTGAAGCATTCGTGATCGACAAATCTCTGCCTCGGTCT
CGGTAAATTCTTCGTTACCCTTGCAGTTGCATCAGCAGGGTGTTCAGCAAAGTTGGAAATCAATAATTCTGTTTAATATC
TTGTTCTTTGTTTATTTTTTATTTTGTACATCTTGTCCATTAAAATATCTTTATTTCTGAAACTATATCACCCACGAAGC
TTAGTTTCCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6760.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis