Browse Element(s) Details


OsAffx.24726.1.S1_s_at

Description tigr:9630.m04328
TID=OsAffx.24726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4471011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24726.1.S1_s_at--1080--1711Chr02:27086742..27086766 (25 bp)
ACCACCACCAGTCCAAGGCGGCTGC
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--347--3371Chr02:27086740..27086764 (25 bp)
CACCACCAGTCCAAGGCGGCTGCGG
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--221--4651Chr02:27086649..27086673 (25 bp)
GCGTCAAGATCGTGGTCAGCAAGCG
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--153--4031Chr02:27086648..27086672 (25 bp)
CGTCAAGATCGTGGTCAGCAAGCGC
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--327--7091Chr02:27086647..27086671 (25 bp)
GTCAAGATCGTGGTCAGCAAGCGCG
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--1110--9711Chr02:27086646..27086670 (25 bp)
TCAAGATCGTGGTCAGCAAGCGCGA
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--425--3231Chr02:27086645..27086669 (25 bp)
CAAGATCGTGGTCAGCAAGCGCGAG
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--501--1491Chr02:27086632..27086656 (25 bp)
AGCAAGCGCGAGCTCAAGCACATGG
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--1095--5151Chr02:27086631..27086655 (25 bp)
GCAAGCGCGAGCTCAAGCACATGGT
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--84--3251Chr02:27086630..27086654 (25 bp)
CAAGCGCGAGCTCAAGCACATGGTC
LOC_Os02g44710
OsAffx.24726.1.S1_s_at--472--2671Chr02:27086629..27086653 (25 bp)
AAGCGCGAGCTCAAGCACATGGTCG
LOC_Os02g44710
Target Sequence 
ACCACCACCAGTCCAAGGCGGCTGCGGAGGCGCTCGAGCAGCTGCACCACGGCGGGCGCGTCCTGTCGCGGGAGGACGTC
GGCGGCGCAGTGCGCGTCAAGATCGTGGTCAGCAAGCGCGAGCTCAAGCACATGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24726.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis