Browse Element(s) Details


Os.52788.1.S1_at

Description gb:AK069258.1
DB_XREF= gi:32979282
TID=Os.52788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012G10, full insert sequence.
FL= gb:AK069258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4145010/11mediator complex subunit SOH1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52788.1.S1_at--215--7531Chr10:21949260..21949284 (25 bp)
GTGGAACATGCTGGTCAACTTTAAC
LOC_Os10g41450
Os.52788.1.S1_at--905--3651Chr10:21949201..21949225 (25 bp)
CTTCATATTTATTTCCTCGTAGGCC
LOC_Os10g41450
Os.52788.1.S1_at--454--3771Chr10:21949186..21949210 (25 bp)
CTCGTAGGCCTTTTTTTGCAGCAAT
LOC_Os10g41450
Os.52788.1.S1_at--1083--9811Chr10:21949153..21949177 (25 bp)
TAACAGTTACTCCTATTTGTGCCGC
LOC_Os10g41450
Os.52788.1.S1_at--706--9911Chr10:21949146..21949170 (25 bp)
TACTCCTATTTGTGCCGCTGGAGAT
LOC_Os10g41450
Os.52788.1.S1_at--861--2451Chr10:21949110..21949134 (25 bp)
AACAATATGTCCTGTACGCTTGGCC
LOC_Os10g41450
Os.52788.1.S1_at--1079--9251Chr10:21949101..21949125 (25 bp)
TCCTGTACGCTTGGCCCTTGAATGA
LOC_Os10g41450
Os.52788.1.S1_at--924--3551Chr10:21949070..21949094 (25 bp)
CATCTATGTGGCCTTGTAATTATAG
LOC_Os10g41450
Os.52788.1.S1_at--354--3111Chr10:21949038..21949062 (25 bp)
AATTTTTTGGTCACTGGAAGATCAC
LOC_Os10g41450
Os.52788.1.S1_at--864--8191Chr10:21949023..21949047 (25 bp)
GGAAGATCACTGAAAACGCCAGAGA
LOC_Os10g41450
Os.52788.1.S1_at--645--1151Chr10:21948992..21949016 (25 bp)
AGTAAAAGCCTGTTTCACAGAGCCC
NONE
Target Sequence 
GTGGAACATGCTGGTCAACTTTAACAGACAGACAACATTGTATGCAAGTGAAGAGTAATCTTCATATTTATTTCCTCGTA
GGCCTTTTTTTGCAGCAATTTAGAAGCTAACAGTTACTCCTATTTGTGCCGCTGGAGATGTAATTTGGATAACAATATGT
CCTGTACGCTTGGCCCTTGAATGATTGGCTCATCTATGTGGCCTTGTAATTATAGGAGTACTAATTTTTTGGTCACTGGA
AGATCACTGAAAACGCCAGAGAATCCACAGTAAAAGCCTGTTTCACAGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis