Browse Element(s) Details


Os.52914.1.S1_at

Description gb:AK069877.1
DB_XREF= gi:32979901
TID=Os.52914.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036D08, full insert sequence.
FL= gb:AK069877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein
LOC_Os02g14890Os.52914.1.S1_at11/112+8292476..8293240expressed protein
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52914.1.S1_at--963--1851Chr02:8292652..8292676 (25 bp)
ACGACGGAGTGGTGCTCCTCATGGA
LOC_Os02g14890
Os.52914.1.S1_at--397--9251Chr02:8292667..8292691 (25 bp)
TCCTCATGGAGCTTCTTGATGGCGA
LOC_Os02g14890
Os.52914.1.S1_at--408--1831Chr02:8292751..8292775 (25 bp)
ACGCCGATCAGCTGAGCCGCGTGAT
LOC_Os02g14890
Os.52914.1.S1_at--570--8911Chr02:8292763..8292787 (25 bp)
TGAGCCGCGTGATCCGGTCGCTCGA
LOC_Os02g14890
Os.52914.1.S1_at--1106--391Chr02:8292912..8292936 (25 bp)
ATCAGACGGCTGGAGGACATGTTTT
LOC_Os02g14890
Os.52914.1.S1_at--608--951Chr02:8292925..8292949 (25 bp)
AGGACATGTTTTCCGACGACCTCGA
LOC_Os02g14890
Os.52914.1.S1_at--1077--7411Chr02:8293023..8293047 (25 bp)
GTGTACGACGACGAGCATTTGTACT
LOC_Os02g14890
Os.52914.1.S1_at--709--4951Chr02:8293037..8293061 (25 bp)
GCATTTGTACTATGGAGATGGCTCC
LOC_Os02g14890
Os.52914.1.S1_at--382--10771Chr02:8293063..8293087 (25 bp)
TTGATGAGCAAGTGTACAGCCCCTT
LOC_Os02g14890
Os.52914.1.S1_at--188--7031Chr02:8293076..8293100 (25 bp)
GTACAGCCCCTTGTGGGAGCAATAA
LOC_Os02g14890
Os.52914.1.S1_at--1141--3031Chr02:8293171..8293195 (25 bp)
AATCCGTGGATATATATCACAGTGT
LOC_Os02g14890
Target Sequence 
ACGACGGAGTGGTGCTCCTCATGGAGCTTCTTGATGGCGAGGAGGAGATGGGGGACGACTACTCGCCGTCGCCGGCGGCA
ACGACCGACGGCGACGGCGACGCCGATCAGCTGAGCCGCGTGATCCGGTCGCTCGAGGCCGAGATCGGCGGTGGCGGCGC
CACCGGGGCGGTGGCGGCGGCGACGGCGACGAGGGACAGCGACGAGAGCATGGCCGCCGCCGGGCCGGCGAGCGACGACG
ACGGCGCAGCAGCAGCTGGGATCAGACGGCTGGAGGACATGTTTTCCGACGACCTCGACGGCTACGGCGGCGGGGCGTTC
GGGTACGGCTGGCCGCCGGAGTTGGCGTTGCCGGCGGCGGCGAGCTGGTGCGTGTACGACGACGAGCATTTGTACTATGG
AGATGGCTCCATTGATGAGCAAGTGTACAGCCCCTTGTGGGAGCAATAAATATGAATAAATCGATGAATTGTTGTAGAAA
TTAGGGAAATAGGTTGATGTGCATAGAGTAAATTATGAAAATCCGTGGATATATATCACAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis