Browse Element(s) Details


OsAffx.24262.1.S1_s_at

Description tigr:9630.m01390
TID=OsAffx.24262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to glucan synthase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1490011/111,3-beta-glucan synthase component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein
LOC_Os02g14890Os.52914.1.S1_at11/112+8292476..8293240expressed protein
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14910OsAffx.2611.1.S1_at11/112+8323890..8325786bZIP transcription factor family protein, expressed
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24262.1.S1_s_at--264--3811Chr02:8316527..8316632 (25 bp)
CTCCTCCTTATCGTTCAAGTTTTGA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--929--9191Chr02:8316652..8316676 (25 bp)
TGCCATATGGGAGCCTATTCAGGTT
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--969--10211Chr02:8316676..8316700 (25 bp)
TATTGCTCATGCTTACGACTACGGA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--426--711Chr02:8316701..8316725 (25 bp)
ATGGGTTCACTGCTATTTTTTCCGA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--228--171Chr02:8316715..8316739 (25 bp)
ATTTTTTCCGATCGCTGCATTAGCA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--277--9711Chr02:8316780..8316804 (25 bp)
TCAACAGGGCATTTTCTAGGCAGTT
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--263--8271Chr02:8316798..8316822 (25 bp)
GGCAGTTGCAGATCCAACCTTTTAT
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--877--3091Chr02:8316878..8316902 (25 bp)
AATACGATCCATTGGTTGGTCAGGA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--253--3091Chr02:8316907..8316931 (25 bp)
AATAATTCTCTGTATCCTGGTGTAC
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--315--6371Chr02:8316953..8316977 (25 bp)
GATCCATCATTCTTTAATTAGCCCA
LOC_Os02g14900
OsAffx.24262.1.S1_s_at--419--151Chr02:8316969..8316993 (25 bp)
ATTAGCCCATACGAGTTTGACGGAT
LOC_Os02g14900
Target Sequence 
CTCCTCCTTATCGTTCAAGTTTTGAGGCCAAAAATTGAATACTATGCCATATGGGAGCCTATTCAGGTTATTGCTCATGC
TTACGACTACGGAATGGGTTCACTGCTATTTTTTCCGATCGCTGCATTAGCATGGATGCCTGTTATCTCCGCCATCCAAA
CCAGGGTTCTTTTCAACAGGGCATTTTCTAGGCAGTTGCAGATCCAACCTTTTATTGCAGGGAAAACCAAACGGAGGTAA
TAACTGATGGCTTTGTTAATTGGAGTTGTGAATACGATCCATTGGTTGGTCAGGATGATAATAATTCTCTGTATCCTGGT
GTACATATTATACGGTATACAGTGTGATCCATCATTCTTTAATTAGCCCATACGAGTTTGACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24262.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis