Browse Element(s) Details


OsAffx.2611.1.S1_at

Description tigr:9630.m01391
TID=OsAffx.2611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1491011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14910OsAffx.2611.1.S1_at11/112+8323890..8325786bZIP transcription factor family protein, expressed
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14948NANA2+8348912..8349208NA
LOC_Os02g14970OsAffx.12044.1.S1_at11/112+8350305..8352194expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2611.1.S1_at--966--1231Chr02:8324873..8324897 (25 bp)
AGTTGCAGTACATCTCTGAGCTTGA
LOC_Os02g14910
OsAffx.2611.1.S1_at--849--1631Chr02:8324902..8325061 (25 bp)
AGCGTCACCACTCTCCAGATGGAGG
LOC_Os02g14910
OsAffx.2611.1.S1_at--589--3431Chr02:8325052..8325076 (25 bp)
CAGATGGAGGTGTCAGCACTGTCAC
LOC_Os02g14910
OsAffx.2611.1.S1_at--1049--7471Chr02:8325080..8325104 (25 bp)
GTGTGGCCTTCCTTGATCATCAGCG
LOC_Os02g14910
OsAffx.2611.1.S1_at--379--431Chr02:8325169..8325380 (25 bp)
ATCTTCAAAGATGCTCACCAGGAGG
LOC_Os02g14910
OsAffx.2611.1.S1_at--1049--31Chr02:8325395..8325419 (25 bp)
ATTGAGCGGCTACGCCAAGTGTACC
LOC_Os02g14910
OsAffx.2611.1.S1_at--117--4391Chr02:8325480..8325504 (25 bp)
CCAAGCATGAGCTGCTGGCGTGCGA
LOC_Os02g14910
OsAffx.2611.1.S1_at--379--5631Chr02:8325605..8325629 (25 bp)
GACACAGCTTGGTCAGTAGTTTTGT
LOC_Os02g14910
OsAffx.2611.1.S1_at--458--3451Chr02:8325618..8325642 (25 bp)
CAGTAGTTTTGTGCAGCTTGTTAAA
LOC_Os02g14910
OsAffx.2611.1.S1_at--840--731Chr02:8325677..8325701 (25 bp)
ATGTTTCGTTTTGCTCATCCTAGCA
LOC_Os02g14910
OsAffx.2611.1.S1_at--88--6271Chr02:8325729..8325753 (25 bp)
GATGTGGATGTATTGTTTGGACCCC
LOC_Os02g14910
Target Sequence 
AGTTGCAGTACATCTCTGAGCTTGAGCGCAGCGTCACCACTCTCCAGATGGAGGTGTCAGCACTGTCACCTCGTGTGGCC
TTCCTTGATCATCAGCGGTCGCTGCTCACCGTCGGCAACAGCCATCTCAAGCAAAGAATCGCCGCCCTCGCACAAGACAA
GATCTTCAAAGATGCTCACCAGGAGGCTCTGAAGAAGGAGATTGAGCGGCTACGCCAAGTGTACCACCAGCAGCAGATCA
AGGCCACCGGAGGCGCCGACATCGCCACGGCGGCCTCAATGCAGGCCAAGCATGAGCTGCTGGCGTGCGAGGGAGCGGCG
ATGCGATAGCGGAAGGCCACCGGTGACCGGTGACCGTCGGCCGGTGGGGATTTTTTTTTTTTTTTTTTGGCAATTTGCCA
TGTGTAAGATGACACAGCTTGGTCAGTAGTTTTGTGCAGCTTGTTAAAAAGTTGGTTGATTTTGTTGTTTCTTTATAATG
TTATGTTTCGTTTTGCTCATCCTAGCAAAAAAATTGTGCTGGGATGGGAGAATTGATGTGGATGTATTGTTTGGACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis