Browse Element(s) Details


Os.52981.1.S1_at

Description gb:AK070253.1
DB_XREF= gi:32980277
TID=Os.52981.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042A07, full insert sequence.
FL= gb:AK070253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2891010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g416801/11undecaprenyl diphosphate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28850OsAffx.1646.1.S1_x_at1/1111+16202581..16203597retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28860NANA11+16212363..16212815hypothetical protein
LOC_Os11g28870NANA11+16215824..16216669hypothetical protein
LOC_Os11g28880NANA11+16217226..16218396hypothetical protein
LOC_Os11g28890NANA11+16218742..16219935hypothetical protein
LOC_Os11g28900NANA11+16223493..16224101retrotransposon protein, putative, unclassified
LOC_Os11g28910Os.22662.1.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.22662.2.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.52981.1.S1_at10/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28920OsAffx.31193.1.S1_at11/1111+16235241..16235519hypothetical protein
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019408biological_processdolichol biosynthesis
GO:0045547molecular_functiondehydrodolichyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52981.1.S1_at--903--6551NONE
GATTAGCATGCAGGATCCCGTCTAC
NONE
Os.52981.1.S1_at--733--7151Chr11:16230622..16230645 (24 bp)
GTCTACCACACAATCCTGAGGATGT
LOC_Os11g28910
Os.52981.1.S1_at--1066--6251Chr11:16230651..16230675 (25 bp)
GATGGGTACCTGTGTGAGTTCTTCA
LOC_Os11g28910
Os.52981.1.S1_at--5--6731Chr11:16230668..16230692 (25 bp)
GTTCTTCATTGAGGACTGCACCACA
LOC_Os11g28910
Os.52981.1.S1_at--1072--7011Chr11:16230707..16230731 (25 bp)
GTACTTCATCCAGCTGCATGGTGCA
LOC_Os11g28910
Os.52981.1.S1_at--121--4931Chr11:16230895..16230919 (25 bp)
GCTTGCTTATGTCGCTTTGGTGCCA
LOC_Os11g28910
Os.52981.1.S1_at--503--7791Chr11:16230913..16230937 (25 bp)
GGTGCCATGTTCTGTTCGTGATGCA
LOC_Os11g28910
Os.52981.1.S1_at--865--6331Chr11:16230932..16230956 (25 bp)
GATGCATCTTTTAATTTCCCTGTGA
LOC_Os11g28910
Os.52981.1.S1_at--572--9751Chr11:16230491..16230989 (25 bp)
TAATAGCTTGCTCCGATTCATATCG
LOC_Os11g28910
Os.52981.1.S1_at--122--1531Chr11:16230990..16231014 (25 bp)
AGCATCGTGCTTGTTGTAGGCCTTA
LOC_Os11g28910
Os.52981.1.S1_at--769--7493Chr11:16231080..16231104 (25 bp)
GTGGTATGTTTTCCTAATCCTACAG
LOC_Os11g28910
Target Sequence 
GATTAGCATGCAGGATCCCGTCTACCACACAATCCTGAGGATGTTTCGTGATGGGTACCTGTGTGAGTTCTTCATTGAGG
ACTGCACCACACCAGAGGGTCGCATGTACTTCATCCAGCTGCATGGTGCACCAGACCTCACTCCTGACCCCCTGTTGTTT
GCTCCACCGCCACCACCAACCTGCTCAGGCCATGTTGAGGGCTGGTACAAGAGGTTCAGTCCTCATGACGATGATGGTAG
CGACGGTGCTAATGGTGGTGCTGATGGTGCAGCAATGTTTTAGCACTGCTTCTGCTTGCTTATGTCGCTTTGGTGCCATG
TTCTGTTCGTGATGCATCTTTTAATTTCCCTGTGATGTCTGTTTAATAGCTTGCTCCGATTCATATCGAGCATCGTGCTT
GTTGTAGGCCTTATTTAAGGGCCCCTTTGAAACACAGGATAGGAAAAACACAGGAATAGGAAAAACGTAGGAATTGAAGT
GGTATGTTTTCCTAATCCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis