Browse Element(s) Details


Os.53034.1.A1_at

Description gb:AK070534.1
DB_XREF= gi:32980558
TID=Os.53034.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062I08, full insert sequence.
FL= gb:AK070534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1819411/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein
LOC_Os11g18170Os.49459.1.S1_at9/1111+10208348..10210791phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18220OsAffx.17052.2.S1_at11/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.17052.1.S1_at2/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.12861.2.S1_x_at1/1111+10248433..10249301hypothetical protein
LOC_Os11g18230OsAffx.18915.1.S1_at11/1111+10253690..10253968hypothetical protein
LOC_Os11g18240OsAffx.22699.1.S1_x_at2/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18240OsAffx.26189.1.S1_at1/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18250NANA11+10265313..10267321retrotransposon protein, putative, unclassified
LOC_Os11g18260OsAffx.940.1.S1_x_at2/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.31845.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.47114.1.S1_x_at1/1111+10268355..10271710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53034.1.A1_at--1027--7971Chr11:10216759..10216783 (25 bp)
GGATGCAAGTTCCTATTGTCAAAGC
LOC_Os11g18194
Os.53034.1.A1_at--808--10071Chr11:10214826..10214850 (25 bp)
TAGTGGGAGTCCTCATGCAGTGAAC
LOC_Os11g18194
Os.53034.1.A1_at--531--9051Chr11:10214811..10214835 (25 bp)
TGCAGTGAACACCTCCTTGGCAATG
LOC_Os11g18194
Os.53034.1.A1_at--951--6771Chr11:10214787..10214811 (25 bp)
GTTAGCTTTACTTTACTCTGGACAG
LOC_Os11g18194
Os.53034.1.A1_at--1156--8971Chr11:10214677..10214701 (25 bp)
TGAACGAGATCCAACACCATTATAT
LOC_Os11g18194
Os.53034.1.A1_at--165--10551Chr11:10214032..10214056 (25 bp)
TTCTTCACTTTACTTCAATTACCCG
LOC_Os11g18194
Os.53034.1.A1_at--874--2031Chr11:10213997..10214021 (25 bp)
ACTTATATCCCATTTGGGCTCTCGG
LOC_Os11g18194
Os.53034.1.A1_at--709--1471Chr11:10213972..10213996 (25 bp)
AGAATTCTGGCACCGACTTGTTGCA
LOC_Os11g18194
Os.53034.1.A1_at--1137--5291Chr11:10213934..10213958 (25 bp)
GAAGGCAGCCATGCACATACTTATG
LOC_Os11g18194
Os.53034.1.A1_at--235--591Chr11:10213901..10213925 (25 bp)
ATCCACACTACATTTGTTCTCTACA
LOC_Os11g18194
Os.53034.1.A1_at--289--1711Chr11:10213772..10213796 (25 bp)
ACCAAACCCGAAGTCACATGTGCTG
LOC_Os11g18194
Target Sequence 
GGATGCAAGTTCCTATTGTCAAAGCAGCTTAGTGCAGGTGGATGGGGTGAGCACTACAGTTCAAGTGAAATTGAGGTCTA
TGTTGATAGTGGGAGTCCTCATGCAGTGAACACCTCCTTGGCAATGTTAGCTTTACTTTACTCTGGACAGATTGAACGAG
ATCCAACACCATTATATCGTGCTGCAAAACAATTAATTAGCATGCAACTTGAAACAGGAGAGTTCCCCCAACAAGAACAT
GTTGGATGCTTCAATTCTTCACTTTACTTCAATTACCCGAACTNCCGCAACTTATATCCCATTTGGGCTCTCGGAGAATT
CTGGCACCGACTTGTTGCAAGCAAGGNCTGAAGAAGGCAGCCATGCACATACTTATGTGATGACAATCCACACTACATTT
GTTCTCTACAAATTTGTGCAATTATTGAAGAGTGCAGTATAGAAAGTACATTGCAAGTTATGGCGATTATTGTATGAACA
CAATGTTACCCTAAAAAATATCAAATTTATAANCACCAAACCCGAAGTCACATGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53034.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis