Browse Element(s) Details


Os.53142.1.S1_at

Description gb:AK070985.1
DB_XREF= gi:32981008
TID=Os.53142.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075I21, full insert sequence.
FL= gb:AK070985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2513011/11expressed protein
LOC_Os09g014304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g333603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g324003/11hypothetical protein
LOC_Os10g167803/11retrotransposon protein, putative, unclassified
LOC_Os07g207803/11retrotransposon protein, putative, unclassified
LOC_Os09g172503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g140503/11retrotransposon protein, putative, unclassified
LOC_Os12g302403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g318703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g159203/11retrotransposon protein, putative, unclassified
LOC_Os07g115703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g151203/11transposon protein, putative, unclassified
LOC_Os12g284303/11transposon protein, putative, unclassified
LOC_Os09g068703/11retrotransposon protein, putative, unclassified
LOC_Os05g208003/11retrotransposon protein, putative, unclassified
LOC_Os05g091803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g051803/11retrotransposon protein, putative, unclassified
LOC_Os06g318503/11retrotransposon protein, putative, unclassified
LOC_Os04g138203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g351303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g121103/11retrotransposon protein, putative, unclassified
LOC_Os03g231003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g120903/11transposon protein, putative, unclassified
LOC_Os04g272603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g176203/11retrotransposon protein, putative, unclassified
LOC_Os08g112803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g338003/11retrotransposon protein, putative, unclassified
LOC_Os03g327703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g068503/11transposon protein, putative, unclassified
LOC_Os09g090003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g263293/11retrotransposon protein, putative, unclassified
LOC_Os04g140603/11retrotransposon protein, putative, unclassified
LOC_Os05g090903/11retrotransposon protein, putative, unclassified
LOC_Os01g259503/11retrotransposon protein, putative, unclassified
LOC_Os01g230403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g091003/11retrotransposon protein, putative, unclassified
LOC_Os06g193103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g241203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g385303/11transposon protein, putative, unclassified
LOC_Os09g131403/11retrotransposon protein, putative, unclassified
LOC_Os06g205403/11transposon protein, putative, unclassified
LOC_Os02g338703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g202503/11retrotransposon protein, putative, unclassified
LOC_Os05g164303/11SHR5-receptor-like kinase, putative, expressed
LOC_Os05g177003/11retrotransposon protein, putative, unclassified
LOC_Os08g452603/11retrotransposon protein, putative, unclassified
LOC_Os12g176303/11retrotransposon protein, putative, unclassified
LOC_Os08g241003/11retrotransposon protein, putative, unclassified
LOC_Os01g200503/11retrotransposon protein, putative, unclassified
LOC_Os08g110803/11retrotransposon protein, putative, unclassified
LOC_Os04g196103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g194303/11retrotransposon protein, putative, unclassified
LOC_Os09g090203/11retrotransposon protein, putative, unclassified
LOC_Os06g484403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g279003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g137603/11retrotransposon protein, putative, unclassified
LOC_Os06g193303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g017603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g090602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g090802/11retrotransposon protein, putative, unclassified
LOC_Os09g092002/11transposon protein, putative, unclassified
LOC_Os05g202002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g026602/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g379262/11transposon protein, putative, unclassified
LOC_Os12g139902/11retrotransposon protein, putative, unclassified
LOC_Os07g344602/11transposon protein, putative, unclassified
LOC_Os12g180502/11retrotransposon protein, putative, unclassified
LOC_Os06g207002/11retrotransposon protein, putative, unclassified
LOC_Os04g048302/11retrotransposon protein, putative, unclassified
LOC_Os07g344802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g172202/11retrotransposon protein, putative, unclassified
LOC_Os08g110002/11retrotransposon protein, putative, unclassified
LOC_Os05g175802/11retrotransposon protein, putative, unclassified
LOC_Os06g378992/11transposon protein, putative, unclassified
LOC_Os09g045702/11retrotransposon protein, putative, unclassified
LOC_Os01g354002/11retrotransposon protein, putative, unclassified
LOC_Os08g121402/11hypothetical protein
LOC_Os05g177702/11transposon protein, putative, unclassified
LOC_Os05g172402/11retrotransposon protein, putative, unclassified
LOC_Os08g245402/11retrotransposon protein, putative, unclassified
LOC_Os06g320902/11retrotransposon protein, putative, unclassified
LOC_Os05g180302/11retrotransposon protein, putative, unclassified
LOC_Os12g255902/11retrotransposon protein, putative, unclassified
LOC_Os04g190202/11hypothetical protein
LOC_Os08g110102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g063742/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g180202/11transposon protein, putative, unclassified
LOC_Os10g119542/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g172002/11retrotransposon protein, putative, unclassified
LOC_Os06g379602/11transposon protein, putative, unclassified
LOC_Os05g177202/11retrotransposon protein, putative, unclassified
LOC_Os06g150602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g453801/11transposon protein, putative, unclassified
LOC_Os06g187301/11retrotransposon protein, putative, unclassified
LOC_Os07g354401/11retrotransposon protein, putative, unclassified
LOC_Os09g240801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g263001/11retrotransposon protein, putative, unclassified
LOC_Os08g108401/11transposon protein, putative, unclassified
LOC_Os01g479601/11retrotransposon protein, putative, unclassified
LOC_Os04g381401/11retrotransposon protein, putative, unclassified
LOC_Os07g354501/11transposon protein, putative, unclassified
LOC_Os09g012401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g202101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g282801/11retrotransposon protein, putative, unclassified
LOC_Os08g108301/11retrotransposon protein, putative, unclassified
LOC_Os12g289301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25100NANA6+14687031..14691038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25110Os.31845.2.S1_x_at1/116+14693468..14696919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25120NANA6+14699171..14701108retrotransposon protein, putative, unclassified
LOC_Os06g25130Os.53142.1.S1_at11/116+14703831..14705817expressed protein
LOC_Os06g25140OsAffx.8340.1.S1_at1/116+14707591..14709378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25140OsAffx.22722.1.S1_x_at1/116+14707591..14709378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25150NANA6+14712431..14715088retrotransposon protein, putative, unclassified
LOC_Os06g25160NANA6+14719492..14720624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25170OsAffx.1196.1.S1_at2/116+14723713..14728036Transposable element protein, putative, Retrotrans_gag
LOC_Os06g25170OsAffx.1196.1.S1_x_at1/116+14723713..14728036Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53142.1.S1_at--908--981244Chr12:6013548..6013572 (25 bp)
TACTGCAAAACTTAACCCCTATATT
NONE
Os.53142.1.S1_at--1092--373299Chr12:6013550..6013574 (25 bp)
CTGCAAAACTTAACCCCTATATTAT
NONE
Os.53142.1.S1_at--187--901297Chr12:6013551..6013575 (25 bp)
TGCAAAACTTAACCCCTATATTATT
NONE
Os.53142.1.S1_at--1142--4931Chr06:14705559..14705583 (25 bp)
GCATTAATCATGCATTTCCCCGTGT
LOC_Os06g25130
Os.53142.1.S1_at--968--3571Chr06:14705560..14705584 (25 bp)
CATTAATCATGCATTTCCCCGTGTG
LOC_Os06g25130
Os.53142.1.S1_at--778--131Chr06:14705561..14705585 (25 bp)
ATTAATCATGCATTTCCCCGTGTGG
LOC_Os06g25130
Os.53142.1.S1_at--25--10511Chr06:14705562..14705586 (25 bp)
TTAATCATGCATTTCCCCGTGTGGC
LOC_Os06g25130
Os.53142.1.S1_at--185--9751Chr06:14705563..14705587 (25 bp)
TAATCATGCATTTCCCCGTGTGGCT
LOC_Os06g25130
Os.53142.1.S1_at--664--3071Chr06:14705564..14705588 (25 bp)
AATCATGCATTTCCCCGTGTGGCTT
LOC_Os06g25130
Os.53142.1.S1_at--1092--9051Chr06:14705569..14705593 (25 bp)
TGCATTTCCCCGTGTGGCTTGCTGA
LOC_Os06g25130
Os.53142.1.S1_at--472--101915Chr10:4950032..4950053 (22 bp)
TATTTTTTTATTGTCAGGCCTGAAG
NONE
Target Sequence 
TACTGCAAAACTTAACCCCTATATTATTACCCCTTGTACCCCCTTGCATTAATCATGCATTTCCCCGTGTGGCTTGCTGA
GTACTGTGGTTGTACTTATTCTTGCTCAATCTTTCCCCCCTTCAGTAAGAGAAGCTTTGGAGAAAAAGTCTTAGGTGGAG
TCCTGGCTTATACCCCAGTTGAGCGCCTGTGAAGATGGAGCCGTAGGCCCGCTAGTCCGCTGCTGTTTATTTTTTTATTG
TCAGGCCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis