Browse Element(s) Details


Os.53144.1.S1_at

Description gb:AK071003.1
DB_XREF= gi:32981026
TID=Os.53144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076N19, full insert sequence.
FL= gb:AK071003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5160011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51550OsAffx.24826.1.S1_at11/112+31570121..31571386expressed protein
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53144.1.S1_at--988--5211Chr02:31597678..31597702 (25 bp)
GAATTACCGAGTCGCGCTAAGCTAC
LOC_Os02g51600
Os.53144.1.S1_at--689--5171Chr02:31597953..31597977 (25 bp)
GCAAGATCTACTTCGCACCGACGTA
LOC_Os02g51600
Os.53144.1.S1_at--33--7651Chr02:31598212..31598236 (25 bp)
GGGAGTCCAGGTTCTCGGATCACAG
LOC_Os02g51600
Os.53144.1.S1_at--84--391Chr02:31598230..31598254 (25 bp)
ATCACAGGCCTGTTTGCAGCGTGTT
LOC_Os02g51600
Os.53144.1.S1_at--734--3371Chr02:31598246..31598270 (25 bp)
CAGCGTGTTTGTGATCGAAGCCGAT
LOC_Os02g51600
Os.53144.1.S1_at--744--2311Chr02:31598294..31598318 (25 bp)
AAAGGGCTACTCAACTCTGGATTCC
LOC_Os02g51600
Os.53144.1.S1_at--296--6591Chr02:31598313..31598337 (25 bp)
GATTCCAGGATCCATTTCGAGTCTC
LOC_Os02g51600
Os.53144.1.S1_at--304--10311Chr02:31598327..31598351 (25 bp)
TTTCGAGTCTCCGATACCACAAAGA
LOC_Os02g51600
Os.53144.1.S1_at--108--4911Chr02:31598356..31598380 (25 bp)
GCTTCTACGATGATTTCTGACTTGT
LOC_Os02g51600
Os.53144.1.S1_at--634--7711Chr02:31598455..31598479 (25 bp)
GGGTGGGCTGCATTTTTCAAGCCTA
LOC_Os02g51600
Os.53144.1.S1_at--1012--2651Chr02:31598473..31598497 (25 bp)
AAGCCTAGCACTTGTCTTACACTAA
LOC_Os02g51600
Target Sequence 
GAATTACCGAGTCGCGCTAAGCTACGACGAGACGAAGACGTTGATGGGGGAGAATGACTGGGATACATTACTTGAGAAAG
ACCAGTTGATGATCGAGAGACAGGCAGGGAGAGTGTTCAAAGGGTGGAAAGAGGGCAAGATCTACTTCGCACCGACGTAC
AAATACAAGCAGAACTCTGACTCATACGCAGGGGAGACGGCCAAATCGAAGAAGAAACGAAGAACACCTGCATGGTGTGA
CCGGATACTGTGGCACGGCCAGGGAATCGAGCAGCTGCAGTACATCAGAGGGGAGTCCAGGTTCTCGGATCACAGGCCTG
TTTGCAGCGTGTTTGTGATCGAAGCCGATGTAGATAATGGAAGCATGATCAGAAAGGGCTACTCAACTCTGGATTCCAGG
ATCCATTTCGAGTCTCCGATACCACAAAGACACAGCTTCTACGATGATTTCTGACTTGTGATTAGTGGTTTTGTCTATAC
TACTATACTTGTAGCTTAATTACAAAAAGCAGGAATGTGTCTACTTTTGTAGTGGGTGGGCTGCATTTTTCAAGCCTAGC
ACTTGTCTTACACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis