Browse Element(s) Details


Os.53163.1.S1_at

Description gb:AK071124.1
DB_XREF= gi:32981147
TID=Os.53163.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080C23, full insert sequence.
FL= gb:AK071124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1097011/11Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10920OsAffx.15362.1.S1_at11/116+5704392..5706867Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_x_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930OsAffx.15364.2.S1_x_at1/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940OsAffx.27143.1.S1_at11/116+5716069..5716479hypothetical protein
LOC_Os06g10950OsAffx.15364.2.S1_x_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950OsAffx.15364.2.S1_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950Os.54289.1.S1_x_at1/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960OsAffx.15364.1.S1_at11/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960OsAffx.15364.2.S1_x_at1/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970Os.53163.1.S1_at11/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970OsAffx.15364.2.S1_x_at1/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980OsAffx.4795.1.S1_at11/116+5733508..5735154Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990Os.26715.1.S1_at11/116+5744189..5746210dnaK protein, expressed
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53163.1.S1_at--926--8851Chr06:5732468..5732492 (25 bp)
TGATGACCGGCCTGAACTCGTGGTA
LOC_Os06g10970
Os.53163.1.S1_at--926--7451Chr06:5732487..5732511 (25 bp)
GTGGTACTACGACAACATCCGGTCC
LOC_Os06g10970
Os.53163.1.S1_at--421--2491Chr06:5732500..5732524 (25 bp)
AACATCCGGTCCAGGTACTGGCAGT
LOC_Os06g10970
Os.53163.1.S1_at--863--971Chr06:5732573..5732597 (25 bp)
AGGAGCACCAGCTGTCCGGGAGCAC
LOC_Os06g10970
Os.53163.1.S1_at--955--8731Chr06:5732627..5732651 (25 bp)
TGTACCTGCTGAGCATGACCGACGC
LOC_Os06g10970
Os.53163.1.S1_at--225--5811Chr06:5732647..5732671 (25 bp)
GACGCCATCGTCACCAGCGGGTGGT
LOC_Os06g10970
Os.53163.1.S1_at--351--3991Chr06:5732714..5732738 (25 bp)
CGTGGGTCATGTTCAAGCCGGAGAA
LOC_Os06g10970
Os.53163.1.S1_at--902--8111Chr06:5732887..5732911 (25 bp)
GGACTGAAACTTGTTCACCCAGAGT
LOC_Os06g10970
Os.53163.1.S1_at--512--10851Chr06:5732962..5732986 (25 bp)
TTGGGATCAAGCTCTGCTGTTAGAC
LOC_Os06g10970
Os.53163.1.S1_at--1056--5671Chr06:5732984..5733008 (25 bp)
GACATTTCACCTTTATACCATCTTT
LOC_Os06g10970
Os.53163.1.S1_at--1151--1031Chr06:5733025..5733049 (25 bp)
AGGGCGGCAGCCATTGACTGGTAAC
LOC_Os06g10970
Target Sequence 
TGATGACCGGCCTGAACTCGTGGTACTACGACAACATCCGGTCCAGGTACTGGCAGTCACCGACGGCCACCGGCGAGGTG
GTGCGCGTGCACCAGCCGAGCCACGAGGAGCACCAGCTGTCCGGGAGCACGACGCACGACATGAAGGCGATGGCGGAGAT
GTACCTGCTGAGCATGACCGACGCCATCGTCACCAGCGGGTGGTCGACGTTCGGGTACGTCGGCCACGGCCTCGGCGGGC
TCTCGCCGTGGGTCATGTTCAAGCCGGAGAACCTCACGACGCCGGACCCGCCGTGCCGGCGCGCCGTGTCCATGGAGCCG
TGCTTGCACGGGCCGCCCTTCTACGACTGCAGGGTGAAGCGTGGCGCCGACACGGGGAAGTTGGTCCCACATGTCAGACA
CTGTGAGGACATGAGCTGGGGACTGAAACTTGTTCACCCAGAGTGAAGAAGGGTGAAGAGGTTATGTAAAAAAAAGACAG
AAATTTTTGGACAATTGGGATCAAGCTCTGCTGTTAGACATTTCACCTTTATACCATCTTTGTTGATGAACTGCTCAAGG
GCGGCAGCCATTGACTGGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis