Browse Element(s) Details


Os.53164.1.S1_at

Description gb:AK071127.1
DB_XREF= gi:32981150
TID=Os.53164.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077L14, full insert sequence.
FL= gb:AK071127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1801011/11Flavonol 3-O-glucosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17990OsAffx.15480.1.S1_at11/116+10461587..10461963hypothetical protein
LOC_Os06g18000Os.11183.1.S1_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18000Os.11183.1.S1_s_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18010Os.53164.1.S1_at11/116+10478286..10479903Flavonol 3-O-glucosyltransferase 5, putative, expressed
LOC_Os06g18020NANA6+10487449..10488915hypothetical protein
LOC_Os06g18030NANA6+10497204..10501080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18040NANA6+10502592..10502831hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009808biological_processlignin metabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53164.1.S1_at--464--5411Chr06:10479355..10479379 (25 bp)
GAAGCGAGGCCTCGTCACCAAGGCA
LOC_Os06g18010
Os.53164.1.S1_at--320--4291Chr06:10479364..10479388 (25 bp)
CCTCGTCACCAAGGCATGGGTGGAT
LOC_Os06g18010
Os.53164.1.S1_at--844--2771Chr06:10479393..10479417 (25 bp)
AAGAGGTCCTGAAGCACGAGTCCGT
LOC_Os06g18010
Os.53164.1.S1_at--327--2731Chr06:10479404..10479428 (25 bp)
AAGCACGAGTCCGTGGCGCTGTTCG
LOC_Os06g18010
Os.53164.1.S1_at--305--7711Chr06:10479588..10479612 (25 bp)
GGGTGATCGGCGCAGAGGAGATATC
LOC_Os06g18010
Os.53164.1.S1_at--391--1791Chr06:10479714..10479738 (25 bp)
ACCGTTGTCTGGTCGAGTTCGCGCG
LOC_Os06g18010
Os.53164.1.S1_at--164--7611Chr06:10479751..10479775 (25 bp)
GGGAACATGTCGCACTAATTGAGTA
LOC_Os06g18010
Os.53164.1.S1_at--703--3511Chr06:10479756..10479780 (25 bp)
CATGTCGCACTAATTGAGTACTGAG
LOC_Os06g18010
Os.53164.1.S1_at--152--3731Chr06:10479765..10479789 (25 bp)
CTAATTGAGTACTGAGACATGGGTT
LOC_Os06g18010
Os.53164.1.S1_at--1155--3131Chr06:10479801..10479825 (25 bp)
AATTCGGATGGAATCCTTGTTACAG
LOC_Os06g18010
Os.53164.1.S1_at--9--8211Chr06:10479810..10479834 (25 bp)
GGAATCCTTGTTACAGATTTTAAAT
LOC_Os06g18010
Target Sequence 
GAAGCGAGGCCTCGTCACCAAGGCATGGGTGGATCAGGAAGAGGTCCTGAAGCACGAGTCCGTGGCGCTGTTCGTGAGCC
ACTGCGGCTGGAACTCGGTGACGGAGGCGGCGGCGAGCGGCGTCCCGGTGCTGGCGCTGCCGAGGTTCGGCGACCAGCGG
GTGAACTCCGGCGTGGTGGCGCGCGCCGGGCTCGGCGTGTGGGCGGACACCTGGAGCTGGGAGGGGGAAGCCGGGGTGAT
CGGCGCAGAGGAGATATCGGAGAAGGTGAAGGCGGCGATGGCGGACGAGGCGTTGCGTAGGAAGGCGGCGAGCCTCGCCA
AGGCCGCCGCGAAGGCCGTCGCCGGCGGTGGATCGAGCCACCGTTGTCTGGTCGAGTTCGCGCGGCTGTGCCAAGGGGGA
ACATGTCGCACTAATTGAGTACTGAGACATGGGTTNTAATTTAAATAATTCGGATGGAATCCTTGTTACAGATTTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis