Browse Element(s) Details


Os.53228.1.S1_at

Description gb:AK071464.1
DB_XREF= gi:32981487
TID=Os.53228.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097O13, full insert sequence.
FL= gb:AK071464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4168011/11salicylic acid-induced protein 19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41660NANA12+25747579..25748688hypothetical protein
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein
LOC_Os12g41680Os.53228.1.S1_at11/1112+25767338..25772900salicylic acid-induced protein 19, putative, expressed
LOC_Os12g41690Os.24249.1.A1_at11/1112+25774023..25779025plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0010072biological_processprimary shoot apical meristem specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53228.1.S1_at--713--2471Chr12:25772355..25772379 (25 bp)
AACAGCATTGCCAGTAACAACAACA
LOC_Os12g41680
Os.53228.1.S1_at--756--3811Chr12:25772418..25772442 (25 bp)
CTGCCAATTGTCACAGGTAGCAACA
LOC_Os12g41680
Os.53228.1.S1_at--496--9971Chr12:25772457..25772481 (25 bp)
TACCTGGATCATGGCCTGCCTGAAT
LOC_Os12g41680
Os.53228.1.S1_at--1017--871Chr12:25772467..25772491 (25 bp)
ATGGCCTGCCTGAATTTGGCAGCTT
LOC_Os12g41680
Os.53228.1.S1_at--202--10551Chr12:25772490..25772514 (25 bp)
TTCTTGGACACCCAGAGCTGTGACA
LOC_Os12g41680
Os.53228.1.S1_at--41--9731Chr12:25772524..25772548 (25 bp)
TCAAGGCAGTGCTGAGCCAGCTCAA
LOC_Os12g41680
Os.53228.1.S1_at--688--8891Chr12:25772561..25772585 (25 bp)
TGAGGTGTTGCCAGGCCTGCCTCCT
LOC_Os12g41680
Os.53228.1.S1_at--1056--4851Chr12:25772676..25772700 (25 bp)
GCTAGTAGTTGATCTTCAGTGTGTA
LOC_Os12g41680
Os.53228.1.S1_at--428--5931Chr12:25772776..25772800 (25 bp)
GAGCATGCCATAGTTTTTCTGTAAG
LOC_Os12g41680
Os.53228.1.S1_at--813--6571Chr12:25772834..25772858 (25 bp)
GATTGCTAAAGTGTGTATACTCAGA
LOC_Os12g41680
Os.53228.1.S1_at--1048--5311Chr12:25772864..25772888 (25 bp)
GAAGTAGAGGTTTGCGTTGTCGAAA
LOC_Os12g41680
Target Sequence 
AACAGCATTGCCAGTAACAACAACAACAGCAACAGTGNTACTGTCAATGCACAGCAATGCTNCCTGCCAATTGTCACAGG
TAGCAACAACAATGGCATGAGNTACCTGGATCATGGCCTGCCTGAATTTGGCAGCTTCTTGGACACCCAGAGCTGTGACA
AGAAGATGCTCAAGGCAGTGCTGAGCCAGCTCAANTCCATTGGGGGTGAGGTGTTGCCAGGCCTGCCTCCTCCATNTGAA
ATGGCTGCTGCTGTCAGCNCTTCTTGGATGAATCACTTNTAGGGAAAAATATTATTCAGACAATATAAGAATAGCTAGCT
AGCTAGTAGTTGATCTTCAGTGTGTATGATGAATTGATGATTTGATATGGTATACATACTTATTTGTGTGATGGTACAAT
ATTTATGTGTGAGTATTAATAGAGCATGCCATAGTTTTTCTGTAAGGCATAGGAAAATTCAGGACTAAAACTATGTAATG
ATTGCTAAAGTGTGTATACTCAGAAATCAGAAGTAGAGGTTTGCGTTGTCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis