Browse Element(s) Details


Os.53263.1.S1_at

Description gb:AK071669.1
DB_XREF= gi:32981692
TID=Os.53263.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107F10, full insert sequence.
FL= gb:AK071669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3594011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed
LOC_Os04g35910Os.17518.1.S1_at11/114+21705978..21709024GM10183p, putative, expressed
LOC_Os04g35920Os.14326.1.S1_at11/114+21709705..21717379Smg-4/UPF3 family protein, expressed
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein
LOC_Os04g35940Os.53263.1.S1_at11/114+21724773..21727000F-box domain containing protein, expressed
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified
LOC_Os04g35960NANA4+21735669..21738702retrotransposon protein, putative, unclassified
LOC_Os04g35970OsAffx.26350.1.S1_at11/114+21742721..21746176F-box domain containing protein
LOC_Os04g35980NANA4+21749621..21751791retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53263.1.S1_at--314--10291Chr04:21725343..21725367 (25 bp)
TTTCTGCAGAACTCGCCTAATTTGG
LOC_Os04g35940
Os.53263.1.S1_at--233--1451Chr04:21725318..21725342 (25 bp)
AGAAGCTCACGTTGCGGCTTTGCGA
LOC_Os04g35940
Os.53263.1.S1_at--855--2491Chr04:21725085..21725109 (25 bp)
AACTGGTCGGGCTTTTGCTGAACGA
LOC_Os04g35940
Os.53263.1.S1_at--198--1231Chr04:21725001..21725025 (25 bp)
AGTTCAGGCCCTCTTTTGTGATGAC
LOC_Os04g35940
Os.53263.1.S1_at--12--8691Chr04:21724985..21725009 (25 bp)
TGTGATGACCGATTCTTAGGCCTCT
LOC_Os04g35940
Os.53263.1.S1_at--1072--10431Chr04:21724970..21724994 (25 bp)
TTAGGCCTCTCCTGAATTCACATGT
LOC_Os04g35940
Os.53263.1.S1_at--330--3151Chr04:21724956..21724980 (25 bp)
AATTCACATGTCTTGTCTGTCTTCC
LOC_Os04g35940
Os.53263.1.S1_at--536--8731Chr04:21724939..21724963 (25 bp)
TGTCTTCCGATGCACTGTCAGTTGT
LOC_Os04g35940
Os.53263.1.S1_at--1104--491Chr04:21724880..21724904 (25 bp)
ATCGGTTTAAGACTGCTCTGTTCTG
LOC_Os04g35940
Os.53263.1.S1_at--194--1571Chr04:21724853..21724877 (25 bp)
AGCTATTGCATGTGTTCTTGCGCGC
LOC_Os04g35940
Os.53263.1.S1_at--1017--10691Chr04:21724836..21724860 (25 bp)
TTGCGCGCTGTGATGCTAGGTTAAT
LOC_Os04g35940
Target Sequence 
TTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGG
GAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTG
ATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTT
GATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTG
TCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTC
TGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis