Browse Element(s) Details


OsAffx.4004.1.S1_at

Description tigr:9632.m03464
TID=OsAffx.4004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3593011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed
LOC_Os04g35910Os.17518.1.S1_at11/114+21705978..21709024GM10183p, putative, expressed
LOC_Os04g35920Os.14326.1.S1_at11/114+21709705..21717379Smg-4/UPF3 family protein, expressed
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein
LOC_Os04g35940Os.53263.1.S1_at11/114+21724773..21727000F-box domain containing protein, expressed
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified
LOC_Os04g35960NANA4+21735669..21738702retrotransposon protein, putative, unclassified
LOC_Os04g35970OsAffx.26350.1.S1_at11/114+21742721..21746176F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4004.1.S1_at--176--8451Chr04:21719262..21719286 (25 bp)
GGCCAGCACTATCATAATCCAGACA
LOC_Os04g35930
OsAffx.4004.1.S1_at--728--3031Chr04:21719247..21719271 (25 bp)
AATCCAGACAAGAACCTAGCTCAGT
LOC_Os04g35930
OsAffx.4004.1.S1_at--65--1211Chr04:21719225..21719249 (25 bp)
AGTATTATCAAGCATTGCCTCCCAT
LOC_Os04g35930
OsAffx.4004.1.S1_at--964--71Chr04:21719212..21719236 (25 bp)
ATTGCCTCCCATCTTTCAGTATCAA
LOC_Os04g35930
OsAffx.4004.1.S1_at--1073--551Chr04:21719153..21719177 (25 bp)
ATCCTCTCTTTCCACCTTATAATTA
LOC_Os04g35930
OsAffx.4004.1.S1_at--308--91Chr04:21719132..21719156 (25 bp)
ATTACCAGCATCCTAATTGGGCGGC
LOC_Os04g35930
OsAffx.4004.1.S1_at--1136--10631Chr04:21719049..21719073 (25 bp)
TTGCCGGTGTTCTCTAACCTAACAA
LOC_Os04g35930
OsAffx.4004.1.S1_at--894--2451Chr04:21719029..21719053 (25 bp)
AACAACCATGGTGCTTCGCGAGTGC
LOC_Os04g35930
OsAffx.4004.1.S1_at--938--4911Chr04:21719017..21719041 (25 bp)
GCTTCGCGAGTGCAATATCCATGTA
LOC_Os04g35930
OsAffx.4004.1.S1_at--227--2291Chr04:21718979..21719003 (25 bp)
AAATGCTGTGGCGTTTCCTGCAGAA
LOC_Os04g35930
OsAffx.4004.1.S1_at--879--2691Chr04:21718939..21718962 (24 bp)
AAGCTCACTCTTCAGAATTGCAAGT
LOC_Os04g35930
Target Sequence 
GGCCAGCACTATCATAATCCAGACAAGAACCTAGCTCAGTATTATCAAGCATTGCCTCCCATCTTTCAGTATCAACAACC
AGTTCAGTATTATGATATACCACCACTCCATCCTCTCTTTCCACCTTATAATTACCAGCATCCTAATTGGGCGGCGCAAC
ACCGTCAACCTATGCCCCTGTTGCAAACAATGCTGGATGACAACCATGGCGGATTGCCGGTGTTCTCTAACCTAACAACC
ATGGTGCTTCGCGAGTGCAATATCCATGTAAATGACAGCATGAAAATGCTGTGGCGTTTCCTGCAGAACACCCCTGCGCT
GGAGAAGCTCACTCTTCAGAATTGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis