Browse Element(s) Details


Os.5068.1.A1_x_at

Description gb:AK109788.1
DB_XREF= gi:32994997
TID=Os.5068.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D03, full insert sequence.
FL= gb:AK109788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3589011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed
LOC_Os04g35910Os.17518.1.S1_at11/114+21705978..21709024GM10183p, putative, expressed
LOC_Os04g35920Os.14326.1.S1_at11/114+21709705..21717379Smg-4/UPF3 family protein, expressed
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5068.1.A1_x_at--100--1191Chr04:21692128..21692152 (25 bp)
AGTACGAGGGCAGCGGCTCGCCCAA
LOC_Os04g35890
Os.5068.1.A1_x_at--678--8311Chr04:21692114..21692138 (25 bp)
GGCTCGCCCAAGAACGTGGTGGACA
LOC_Os04g35890
Os.5068.1.A1_x_at--1080--4352Chr10:10871774..10871822 (24 bp)
CCAAGAACGTGGTGGACATGGCCGT
NONE
Os.5068.1.A1_x_at--466--8131Chr04:21692094..21692118 (25 bp)
GGACATGGCCGTGCCGCACATCGAG
LOC_Os04g35890
Os.5068.1.A1_x_at--923--2091Chr04:21692077..21692101 (25 bp)
ACATCGAGGGCGACCGGGTGCACCG
LOC_Os04g35890
Os.5068.1.A1_x_at--680--1731Chr04:21691943..21691967 (25 bp)
ACCATGAGCGAGGTCGTGGGCGTGC
LOC_Os04g35890
Os.5068.1.A1_x_at--291--3931Chr04:21691822..21691846 (25 bp)
CGGCGACGTGACGTGGCATGTCGTG
LOC_Os04g35890
Os.5068.1.A1_x_at--844--8271Chr04:21691808..21691832 (25 bp)
GGCATGTCGTGGAATGGAATGCCCC
LOC_Os04g35890
Os.5068.1.A1_x_at--766--7691Chr04:21691745..21691769 (25 bp)
GGAGGAGAGTTTTCTTTTGAGGATT
LOC_Os04g35890
Os.5068.1.A1_x_at--708--10391Chr04:21691580..21691604 (25 bp)
TTTTGTTCTTTTCTGGTCTTAATAT
LOC_Os04g35890
Os.5068.1.A1_x_at--118--10191Chr04:21691558..21691582 (25 bp)
TATACATATATTGAAGTCTTCCTCG
LOC_Os04g35890
Target Sequence 
AGTACGAGGGCAGCGGCTCGCCCAAGAACGTGGTGGACATGGCCGTGCCGCACATCGAGGGCGACCGGGTGCACCGGGTG
CTCGACGCGAGGCTGCCGCTGCCGACGCCGTGGGAGATGGAGGCCGTCGCCTACGTCGGCTACCTGGCGGCCGACTGCGT
CAGGCTGGCCGGCCGCGACCGCCCCACCATGAGCGAGGTCGTGGGCGTGCTCGANCGGGCCGTGGCGGCGTNCGACGAGT
ACGAGGAAGGCGGCGCCGGCGCCGGCGGCGAGCCCGCGCTGTNGCGGTCGTGCNCCGATGGGTCCNCGGCGACGTGACGT
GGCATGTCGTGGAATGGAATGCCCCCNTTTGCATGGTTGGCCTCCCNTGCGCAAGAACAACGGGGAGGAGAGTTTTCTTT
TGAGGATTTTTTGTTTGTTTTATTGTTATTGCTTAGCNTTAGTCNCAGAACATTCATTAGTNTTTTATAGAAAAGAATCA
AAATTTTAGTGTAAATGGTCTTNTGACATTGTTTTGATTTGAAATATTTTTGGGTTTTCTCCCCCCTTTTTTGTTCTTTT
CTGGTCTTAATATACATATATTGAAGTCTTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5068.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis