Browse Element(s) Details


OsAffx.26349.1.S1_at

Description tigr:9632.m03458
TID=OsAffx.26349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DDT domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3588011/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26349.1.S1_at--752--151Chr04:21677047..21677071 (25 bp)
ATTATGGACTTGTTCACACTGCCGT
LOC_Os04g35880
OsAffx.26349.1.S1_at--800--5371Chr04:21677022..21677046 (25 bp)
GAAGCTTAAAATTCTGCGGGAACTG
LOC_Os04g35880
OsAffx.26349.1.S1_at--1108--6311Chr04:21676994..21677018 (25 bp)
GATGAAGCCATAACAACTTCTGCTG
LOC_Os04g35880
OsAffx.26349.1.S1_at--745--5851Chr04:21676943..21676967 (25 bp)
GACCAGCAACAAGCTATTGCAGCAT
LOC_Os04g35880
OsAffx.26349.1.S1_at--480--2771Chr04:21676888..21676912 (25 bp)
AAGAGCATAAGCTGGCCATGGAAGG
LOC_Os04g35880
OsAffx.26349.1.S1_at--48--9891Chr04:21676732..21676756 (25 bp)
TACATCCTGTGAGAACCTATACCCT
LOC_Os04g35880
OsAffx.26349.1.S1_at--637--5431Chr04:21676720..21676744 (25 bp)
GAACCTATACCCTTCTTCATGTGAA
LOC_Os04g35880
OsAffx.26349.1.S1_at--889--9051Chr04:21676693..21676717 (25 bp)
TGCATATGCACGTTCATTCTTACAT
LOC_Os04g35880
OsAffx.26349.1.S1_at--1024--5391Chr04:21676647..21676671 (25 bp)
GAAGCTATCCATGACAGCAGGTGCA
LOC_Os04g35880
OsAffx.26349.1.S1_at--888--5011Chr04:21676631..21676655 (25 bp)
GCAGGTGCAAGTCTTGTTGCTAATC
LOC_Os04g35880
OsAffx.26349.1.S1_at--1028--4831Chr04:21676613..21676637 (25 bp)
GCTAATCTTTGCTTTTTCTGCATAG
LOC_Os04g35880
Target Sequence 
ATTATGGACTTGTTCACACTGCCGTGAAGCTTAAAATTCTGCGGGAACTGGTAGATGAAGCCATAACAACTTCTGCTGTA
AGACAGAATATAGATGAAAAGATTGACCAGCAACAAGCTATTGCAGCATCAAAAAGAGAGCTTGCTAGAAATAAAAAGGA
AGAGCATAAGCTGGCCATGGAAGGGGTGACAGAAAAGGAAATGAGTCAGACAGATGCTGCAGAAAATGTCAACGGGAATG
TAAATGGTCAGGTTGTGGAAAAAGAAGGAAAGGAGAAGAAAAACATTTATGCCAACAAGATGGGAGAGGGGAAAGTACAT
CCTGTGAGAACCTATACCCTTCTTCATGTGAACTTGCATATGCACGTTCATTCTTACATATGCAAATGCATGTCTCTGCT
GAAGCTATCCATGACAGCAGGTGCAAGTCTTGTTGCTAATCTTTGCTTTTTCTGCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis