Browse Element(s) Details


OsAffx.14166.1.S1_at

Description tigr:9632.m03453
TID=OsAffx.14166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g358308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14166.1.S1_at--331--10351Chr11:14761828..14761866 (24 bp)
TTGGGACGGAGTTTACAGTCTCCTC
NONE
OsAffx.14166.1.S1_at--680--6071NONE
GAGTTTACAGTCTCCTCGGACAAGG
NONE
OsAffx.14166.1.S1_at--315--3951NONE
CGGACAAGGAACCAGCCGACATGTG
NONE
OsAffx.14166.1.S1_at--2--9171Chr04:21652302..21652326 (25 bp)
TGCCCGTTGCCTCAGAGTGGCAGTC
LOC_Os04g35830
OsAffx.14166.1.S1_at--865--9651Chr04:21652313..21652337 (25 bp)
TCAGAGTGGCAGTCTCTCCATCTCC
LOC_Os04g35830
OsAffx.14166.1.S1_at--273--8471Chr04:21652351..21652375 (25 bp)
TGTCCACCGGCAAGTGTGGTAGGTC
LOC_Os04g35830
OsAffx.14166.1.S1_at--541--2871Chr04:21652362..21652386 (25 bp)
AAGTGTGGTAGGTCACCGTCGCTGC
LOC_Os04g35830
OsAffx.14166.1.S1_at--532--8191Chr04:21652487..21652511 (25 bp)
GGAAGACGGGTTGCCTCTTGCTGCC
LOC_Os04g35830
OsAffx.14166.1.S1_at--1090--811Chr04:21652519..21652543 (25 bp)
ATGGATTTCTTGGACATGACGAGGG
LOC_Os04g35830
OsAffx.14166.1.S1_at--350--7571Chr04:21652544..21652568 (25 bp)
GGGCGATGCGCCGTCAGAATTTGAT
LOC_Os04g35830
OsAffx.14166.1.S1_at--226--611Chr04:21652549..21652573 (25 bp)
ATGCGCCGTCAGAATTTGATATTGC
LOC_Os04g35830
Target Sequence 
TTGGGACGGAGTTTACAGTCTCCTCGGACAAGGAACCAGCCGACATGTGGGCCCGCGCACAGTGTCGTCCTCCTCCTCTC
GCCAACGCTCAACGTCGGCCGCCCCTTCTTCCTCTGCCCGTTGCCTCAGAGTGGCAGTCTCTCCATCTCCCCTGTCTCCG
CCGTGTCCACCGGCAAGTGTGGTAGGTCACCGTCGCTGCCGAGCCCGGTCATCAGCGAGGGCAGGGATGTTGAGGACGCC
GACCCCAACCTGCCTGGCTTCTTCAAGAACCCCTCCCGCCTCTCCGACAACGAGATAGGGGAAGACGGGTTGCCTCTTGC
TGCCGAGCCTGATGGATTTCTTGGACATGACGAGGGGGGCGATGCGCCGTCAGAATTTGATATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis