Browse Element(s) Details


Os.54079.1.S1_x_at

Description gb:AK101745.1
DB_XREF= gi:32986954
TID=Os.54079.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061O13, full insert sequence.
FL= gb:AK101745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3588011/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54079.1.S1_x_at--196--6091Chr04:21677878..21677902 (25 bp)
GAGTCAACATCACAGAATTCCCCAT
LOC_Os04g35880
Os.54079.1.S1_x_at--866--2951Chr04:21677509..21677533 (25 bp)
AAGGCCTACAGCAGATGATCCCAGT
LOC_Os04g35880
Os.54079.1.S1_x_at--665--5751Chr04:21677474..21677498 (25 bp)
GACGTCCACTGTCTACAGATTTCAG
LOC_Os04g35880
Os.54079.1.S1_x_at--1021--7951Chr04:21677428..21677452 (25 bp)
GGATCTACTTATGGTTTGGGACTTC
LOC_Os04g35880
Os.54079.1.S1_x_at--569--8611Chr04:21677412..21677436 (25 bp)
TGGGACTTCTGCATGACTTACGGGA
LOC_Os04g35880
Os.54079.1.S1_x_at--923--171Chr04:21677385..21677409 (25 bp)
ATTTTATGCTTGTCTCCATTTTCCC
LOC_Os04g35880
Os.54079.1.S1_x_at--451--2731Chr04:21677326..21677350 (25 bp)
AAGCAACCTTGTTCTTCTTGTGGAA
LOC_Os04g35880
Os.54079.1.S1_x_at--877--8211Chr04:21677305..21677329 (25 bp)
GGAATTACATGCTGCACTCTTCCAT
LOC_Os04g35880
Os.54079.1.S1_x_at--381--5111Chr04:21677292..21677316 (25 bp)
GCACTCTTCCATTTGCTCATTAAAG
LOC_Os04g35880
Os.54079.1.S1_x_at--952--4651Chr04:21677261..21677285 (25 bp)
GCGGGTATTTTATGTTTCTCCAGAA
LOC_Os04g35880
Os.54079.1.S1_x_at--695--2071Chr04:21677141..21677165 (25 bp)
ACATTGGTCACCTGGGCTGAGTATC
LOC_Os04g35880
Target Sequence 
GAGTCAACATCACAGAATTCCCCATGGATTATACATGCAAATCTTGCAAAGAAATATGGAATACCCACTGAGCCCCCAAA
AGACTTATTGAATGGTCAAGGGTTGCCAAAACTGAGGAGAGGACTCGAGAATGGAACCACAGATGATGTCAGAAAAAAAT
TGAAGAAAGGTGAGCCAATTGATGATCTTTTATTAAGGCCTACAGCAGATGATCCCAGTCNGTCAAAAAGACGTCCACTG
TCTACAGATTTCAGAGTGCCTGTAGATTCTGTTGGGGATCTACTTATGGTTTGGGACTTCTGCATGACTTACGGGAGGAT
TTTATGCTTGTCTCCATTTTCCCTCTCGGACCTGGAGAATGCNATCTGCCACAAAGAAAGCAACCTTGTTCTTCTTGTGG
AATTACATGCTGCACTCTTCCATTTGCTCATTAAAGATGGANGCGGGTATTTTATGTTTCTCCAGAACAAGAGAAGGAAA
TTAAAGGTAACATTGGTCACCTGGGCTGAGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54079.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis