Browse Element(s) Details


Os.9654.1.S1_at

Description gb:AK067590.1
DB_XREF= gi:32977608
TID=Os.9654.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112G22, full insert sequence.
FL= gb:AK067590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g358409/11T-complex protein 11 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9654.1.S1_at--772--4591Chr04:21660164..21660188 (25 bp)
GCGACATCGTCTTCGGTAAGGTGTC
LOC_Os04g35840
Os.9654.1.S1_at--1135--4091Chr04:21660165..21660189 (25 bp)
CGACATCGTCTTCGGTAAGGTGTCC
LOC_Os04g35840
Os.9654.1.S1_at--778--2091Chr04:21660167..21660191 (25 bp)
ACATCGTCTTCGGTAAGGTGTCCCG
LOC_Os04g35840
Os.9654.1.S1_at--521--1451Chr04:21660245..21660269 (25 bp)
AGAAGCTAGCCGAAGCGCCGCTGCG
LOC_Os04g35840
Os.9654.1.S1_at--25--5411Chr04:21660246..21660270 (25 bp)
GAAGCTAGCCGAAGCGCCGCTGCGA
LOC_Os04g35840
Os.9654.1.S1_at--923--891Chr04:21660371..21660395 (25 bp)
AGGCGCTTGCCTTGTGAAGAGCAGA
LOC_Os04g35840
Os.9654.1.S1_at--964--8391Chr04:21660372..21660396 (25 bp)
GGCGCTTGCCTTGTGAAGAGCAGAA
LOC_Os04g35840
Os.9654.1.S1_at--169--4591Chr04:21660373..21660397 (25 bp)
GCGCTTGCCTTGTGAAGAGCAGAAT
LOC_Os04g35840
Os.9654.1.S1_at--653--2251Chr04:21660699..21660723 (25 bp)
AAATATTTCGATCGGTTGTGCAGTG
LOC_Os04g35840
Os.9654.1.S1_at--617--7711Chr04:21660724..21660748 (25 bp)
GGGTGATTGAAATTTGGTTGGCATT
NONE
Os.9654.1.S1_at--830--6591Chr04:21660728..21660752 (25 bp)
GATTGAAATTTGGTTGGCATTCACC
NONE
Target Sequence 
GCGACATCGTCTTCGGTAAGGTGTCCCGGGCGGTCTACTTTGCCTTCCGCGGCGTCGTCCTCGGTGGCGGCGCCAAGGGC
AAGAAGCTAGCCGAAGCGCCGCTGCGACGCCTCGGCGCGGCGAAGCTCGCCGACAGGGTTGTCAAGGCCGGGGAGGTGCT
GATAAAGATGGCAGTCATATCAGAGAAGGTCCATGGACAATGGTACAAGGCGCTTGCCTTGTGAAGAGCAGAATAGGGTT
TGTGTTGTTTTGTGAATATACATTACGGATTACGGACTGTAAATTCTTGTCCTACCGGGGTGAGGTAGGAAATATTGGGC
ATTGTACATAAATTTATATAGGTGTTAATTGGTAGGCTGATTTCAGTGTCAAAAATTAATTCTGGGTGCAGGGCTAATAT
GGATGACCCTCACCCCAGAATTTAGCCAGTGGTTAGATGTGCTGAATTGCACCTGGGTGTAAGTTAAATCTGATGTAATC
TATTTGCTCTTGGAACTGAAATAATGTGAATATTTTAATTTAAATATTGTGATGTAAATATTTCGATCGGTTGTGCAGTG
GGGTGATTGAAATTTGGTTGGCATTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis