Browse Element(s) Details


Os.6065.1.S1_at

Description gb:AK065119.1
DB_XREF= gi:32975137
TID=Os.6065.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O14, full insert sequence.
FL= gb:AK065119.1 gb:AK098870.1 gb:AK062578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3590011/11translocon Tic40, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35870Os.45957.3.S1_x_at2/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35870Os.45957.4.S1_x_at1/114+21671431..21676236retrotransposon protein, putative, unclassified
LOC_Os04g35880Os.54079.1.S1_x_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35880OsAffx.26349.1.S1_at11/114+21676479..21680433DDT domain containing protein, expressed
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed
LOC_Os04g35910Os.17518.1.S1_at11/114+21705978..21709024GM10183p, putative, expressed
LOC_Os04g35920Os.14326.1.S1_at11/114+21709705..21717379Smg-4/UPF3 family protein, expressed
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein
LOC_Os04g35940Os.53263.1.S1_at11/114+21724773..21727000F-box domain containing protein, expressed
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6065.1.S1_at--965--2951Chr04:21700122..21700146 (25 bp)
AATGGCTAGTGGATCGTCGCCGTGA
LOC_Os04g35900
Os.6065.1.S1_at--934--171Chr04:21700084..21700108 (25 bp)
ATTTTTGTTGCCCTATCATCTCTTC
LOC_Os04g35900
Os.6065.1.S1_at--942--431Chr04:21700067..21700091 (25 bp)
ATCTCTTCCAAGTGGCTGCGGTAAC
LOC_Os04g35900
Os.6065.1.S1_at--863--7831Chr04:21700048..21700072 (25 bp)
GGTAACATCTGTTGATCGGCTGAGT
LOC_Os04g35900
Os.6065.1.S1_at--313--5551Chr04:21700018..21700042 (25 bp)
GAAACGAAGTTCATCTGTTCAGTCA
LOC_Os04g35900
Os.6065.1.S1_at--728--3871Chr04:21699968..21699992 (25 bp)
CTGTCAGGGTTTTTTGAGTTGCCAA
LOC_Os04g35900
Os.6065.1.S1_at--142--7031Chr04:21699942..21699966 (25 bp)
GTACATCATCATATCGCCTAGTGTT
LOC_Os04g35900
Os.6065.1.S1_at--1142--8551Chr04:21699917..21699941 (25 bp)
TGGTTTGGTAGTGACCCTGCCTCAA
LOC_Os04g35900
Os.6065.1.S1_at--584--10011Chr04:21699822..21699846 (25 bp)
TAGCTTGTGCTTTGACGTTACGAGG
LOC_Os04g35900
Os.6065.1.S1_at--162--7931Chr04:21699669..21699693 (25 bp)
GGATTGGTGCTTGTGTTACTCTACA
LOC_Os04g35900
Os.6065.1.S1_at--1088--10491Chr04:21699624..21699648 (25 bp)
TTCAAGTTCTTGAGGCTACTGAGCT
LOC_Os04g35900
Target Sequence 
AATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAAC
ATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCA
GGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAG
GCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTA
CGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTG
TTAGCATTGCAATGCAAGCGAACAAGTTTACTATCTTCCAAAGCAACTTGGTTGGATTGGTGCTTGTGTTACTCTACATA
TAATTTGGAGGCTAATAATTCAAGTTCTTGAGGCTACTGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis