Browse Element(s) Details


Os.53277.1.S1_at

Description gb:AK071746.1
DB_XREF= gi:32981769
TID=Os.53277.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111G24, full insert sequence.
FL= gb:AK071746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2449011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24440Os.14491.2.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.47463.1.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.40288.1.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.41248.4.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24450NANA6+14325222..14327797retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g24460NANA6+14331375..14331900PDR-type ABC transporter 1, putative
LOC_Os06g24470OsAffx.4928.1.S1_at11/116+14336586..14338038hypothetical protein
LOC_Os06g24470OsAffx.8319.1.S1_x_at1/116+14336586..14338038hypothetical protein
LOC_Os06g24480NANA6+14341649..14342274hypothetical protein
LOC_Os06g24490Os.53277.1.S1_at11/116+14346072..14347227expressed protein
LOC_Os06g24500OsAffx.11458.1.S1_s_at1/116+14350929..14351618hypothetical protein
LOC_Os06g24510OsAffx.13241.1.S1_at1/116+14364345..14368020retrotransposon, putative, centromere-specific
LOC_Os06g24520OsAffx.15598.1.S1_at11/116+14370761..14371030hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53277.1.S1_at--840--7231Chr06:14346595..14346619 (25 bp)
GTCGCCATGTTCGATCACAACGTCG
LOC_Os06g24490
Os.53277.1.S1_at--746--10531Chr06:14346562..14346586 (25 bp)
TTCTACCCGGTGATGTCCTACGACA
LOC_Os06g24490
Os.53277.1.S1_at--138--771Chr06:14346550..14346574 (25 bp)
ATGTCCTACGACACGAGGCAGGTGC
LOC_Os06g24490
Os.53277.1.S1_at--687--6131Chr06:14346504..14346528 (25 bp)
GAGGGCTCGTCGGAACCATGCTGTT
LOC_Os06g24490
Os.53277.1.S1_at--38--10571Chr06:14346445..14346469 (25 bp)
TTCCCGGTACACGTGGCTTAATAAG
LOC_Os06g24490
Os.53277.1.S1_at--220--9751Chr06:14346427..14346451 (25 bp)
TAATAAGACCGACCCACGTGGATGT
LOC_Os06g24490
Os.53277.1.S1_at--607--1911Chr06:14346412..14346436 (25 bp)
ACGTGGATGTTTTCCTTTCCAGCAG
LOC_Os06g24490
Os.53277.1.S1_at--2--8732Chr06:14346379..14346403 (25 bp)
TGTCTTGCGTGCTTTGCATCTCCTA
LOC_Os06g24490
Os.53277.1.S1_at--769--4971Chr06:14346364..14346388 (25 bp)
GCATCTCCTAGTTGTCTTGTAAAGT
LOC_Os06g24490
Os.53277.1.S1_at--669--1871Chr06:14346329..14346353 (25 bp)
ACGTATAAACTCTGTCTAGATTCAT
LOC_Os06g24490
Os.53277.1.S1_at--841--10111Chr06:14346103..14346127 (25 bp)
TATGTGGTCCCATTTATTACATGTA
LOC_Os06g24490
Target Sequence 
GTCGCCATGTTCGATCACAACGTCGGCGCCTGCTTCTACCCGGTGATGTCCTACGACACGAGGCAGGTGCTCACCGACGT
GCCGCTCGCCGGAGGGCTCGTCGGAACCATGCTGTTCGCGACGTTCCCGTCGACGCGGCACGGGATCGGTTTCCCGGTAC
ACGTGGCTTAATAAGACCGACCCACGTGGATGTTTTCCTTTCCAGCAGCTGCCTCCTGTCTTGCGTGCTTTGCATCTCCT
AGTTGTCTTGTAAAGTTGTACAATTGACGTATAAACTCTGTCTAGATTCATTAATATAAATATAAATGTGGAAAATGCTA
AAATGACTTATATTATAAAATAGAGGGAGTAATAGATTTAACGATTCAAAATTACGTGAAACTTACATACAAGTTACACT
GTAGTTACATGCAAGTTACAGTGTAATTACACTATAATTGTACTATAATTACATCTGTTAAATTTTTAGGAGAAAATTTA
TCAACAAATGTATATGTGGTCCCATTTATTACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis