Browse Element(s) Details


OsAffx.15598.1.S1_at

Description tigr:9634.m02426
TID=OsAffx.15598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2452011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24490Os.53277.1.S1_at11/116+14346072..14347227expressed protein
LOC_Os06g24500OsAffx.11458.1.S1_s_at1/116+14350929..14351618hypothetical protein
LOC_Os06g24510OsAffx.13241.1.S1_at1/116+14364345..14368020retrotransposon, putative, centromere-specific
LOC_Os06g24520OsAffx.15598.1.S1_at11/116+14370761..14371030hypothetical protein
LOC_Os06g24530OsAffx.31753.1.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24530OsAffx.31753.4.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24540Os.48853.1.S1_at9/116+14385822..14389245expressed protein
LOC_Os06g24550OsAffx.27807.1.S1_at11/116+14393106..14393456hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15598.1.S1_at--1038--6291Chr06:14370794..14370818 (25 bp)
GATGATGATAGCACGGAAACCATGG
LOC_Os06g24520
OsAffx.15598.1.S1_at--39--7731Chr06:14370825..14370849 (25 bp)
GGGTGGGCGGTGAGCCAGTGGCAAA
LOC_Os06g24520
OsAffx.15598.1.S1_at--289--6691Chr06:14370856..14370880 (25 bp)
GTTGCCTCGCCGCTACTTAGAGCAA
LOC_Os06g24520
OsAffx.15598.1.S1_at--281--4471Chr06:14370859..14370883 (25 bp)
GCCTCGCCGCTACTTAGAGCAAGGA
LOC_Os06g24520
OsAffx.15598.1.S1_at--731--4511Chr06:14370864..14370888 (25 bp)
GCCGCTACTTAGAGCAAGGAGGAGT
LOC_Os06g24520
OsAffx.15598.1.S1_at--259--1071Chr06:14370902..14370926 (25 bp)
AGGGAGATCCTAGTTGGTTGGGTAG
LOC_Os06g24520
OsAffx.15598.1.S1_at--401--10831Chr06:14370919..14370943 (25 bp)
TTGGGTAGGGCTTGCCAGCAACGTT
LOC_Os06g24520
OsAffx.15598.1.S1_at--933--10071Chr06:14370924..14370948 (25 bp)
TAGGGCTTGCCAGCAACGTTGGCGA
LOC_Os06g24520
OsAffx.15598.1.S1_at--95--1451Chr06:14370935..14370959 (25 bp)
AGCAACGTTGGCGACTTTCTTGCAC
LOC_Os06g24520
OsAffx.15598.1.S1_at--348--10851Chr06:14370942..14370966 (25 bp)
TTGGCGACTTTCTTGCACCGGCGAG
LOC_Os06g24520
OsAffx.15598.1.S1_at--909--5691Chr06:14370947..14370971 (25 bp)
GACTTTCTTGCACCGGCGAGCCAGG
LOC_Os06g24520
Target Sequence 
GATGATGATAGCACGGAAACCATGGGGATGGGGGTGGGCGGTGAGCCAGTGGCAAAGGCGGGGTTGCCTCGCCGCTACTT
AGAGCAAGGAGGAGTAAGGGGAGTGAGAAGGGAGATCCTAGTTGGTTGGGTAGGGCTTGCCAGCAACGTTGGCGACTTTC
TTGCACCGGCGAGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis