Browse Element(s) Details

OsAffx.27807.1.S1_at

Description

tigr:9634.m02429
TID=OsAffx.27807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g24550	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g24520	OsAffx.15598.1.S1_at	11/11	6	+	14370761..14371030	hypothetical protein
LOC_Os06g24530	OsAffx.31753.1.S1_s_at	11/11	6	+	14378943..14382469	hAT family dimerisation domain containing protein
LOC_Os06g24530	OsAffx.31753.4.S1_s_at	11/11	6	+	14378943..14382469	hAT family dimerisation domain containing protein
LOC_Os06g24540	Os.48853.1.S1_at	9/11	6	+	14385822..14389245	expressed protein
LOC_Os06g24550	OsAffx.27807.1.S1_at	11/11	6	+	14393106..14393456	hypothetical protein
LOC_Os06g24560	OsAffx.15600.1.S1_at	11/11	6	+	14397933..14398253	hypothetical protein
LOC_Os06g24560	OsAffx.15600.1.S1_x_at	10/11	6	+	14397933..14398253	hypothetical protein
LOC_Os06g24570	OsAffx.448.1.S1_x_at	1/11	6	+	14401930..14407552	retrotransposon protein, putative, unclassified
LOC_Os06g24580	OsAffx.28472.1.S1_x_at	6/11	6	+	14413518..14414629	hypothetical protein
LOC_Os06g24580	OsAffx.13714.1.S1_x_at	1/11	6	+	14413518..14414629	hypothetical protein
LOC_Os06g24594	Os.50241.1.S1_at	11/11	6	+	14417164..14427792	exonuclease family protein, expressed
LOC_Os06g24594	Os.53187.1.S1_at	11/11	6	+	14417164..14427792	exonuclease family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27807.1.S1_at--458--757	1	Chr06:14393174..14393198 (25 bp)	GGGCGTCGGTGGCAAGAGCACTGGC	LOC_Os06g24550
OsAffx.27807.1.S1_at--1161--559	1	Chr06:14393211..14393235 (25 bp)	GACAATGGGGATGCACCGCTGCCAT	LOC_Os06g24550
OsAffx.27807.1.S1_at--926--381	1	Chr06:14393229..14393253 (25 bp)	CTGCCATCGTCCATGGGCGCGGATC	LOC_Os06g24550
OsAffx.27807.1.S1_at--383--457	1	Chr06:14393245..14393269 (25 bp)	GCGCGGATCCCCTTGTGTATGCCAT	LOC_Os06g24550
OsAffx.27807.1.S1_at--1013--929	1	Chr06:14393252..14393276 (25 bp)	TCCCCTTGTGTATGCCATCGAGGTA	LOC_Os06g24550
OsAffx.27807.1.S1_at--630--59	1	Chr06:14393263..14393287 (25 bp)	ATGCCATCGAGGTAGGCTACTGCCG	LOC_Os06g24550
OsAffx.27807.1.S1_at--126--939	1	Chr06:14393269..14393293 (25 bp)	TCGAGGTAGGCTACTGCCGCTGCCA	LOC_Os06g24550
OsAffx.27807.1.S1_at--770--917	1	Chr06:14393283..14393307 (25 bp)	TGCCGCTGCCACCATAGGCTAGTTG	LOC_Os06g24550
OsAffx.27807.1.S1_at--128--479	1	Chr06:14393287..14393311 (25 bp)	GCTGCCACCATAGGCTAGTTGGCGA	LOC_Os06g24550
OsAffx.27807.1.S1_at--33--727	1	Chr06:14393329..14393353 (25 bp)	GTCCTCAGGCAATCGTGTGGCTGGC	LOC_Os06g24550
OsAffx.27807.1.S1_at--946--963	1	Chr06:14393333..14393357 (25 bp)	TCAGGCAATCGTGTGGCTGGCCGCC	LOC_Os06g24550

Target Sequence

GGGCGTCGGTGGCAAGAGCACTGGCGGGGAGAGTGAGGACAATGGGGATGCACCGCTGCCATCGTCCATGGGCGCGGATC
CCCTTGTGTATGCCATCGAGGTAGGCTACTGCCGCTGCCACCATAGGCTAGTTGGCGAGGAGGAGGATGGGAGGGGTCCT
CAGGCAATCGTGTGGCTGGCCGCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis