Browse Element(s) Details


OsAffx.15600.1.S1_x_at

Description tigr:9634.m02430
TID=OsAffx.15600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2456010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24530OsAffx.31753.1.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24530OsAffx.31753.4.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24540Os.48853.1.S1_at9/116+14385822..14389245expressed protein
LOC_Os06g24550OsAffx.27807.1.S1_at11/116+14393106..14393456hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_at11/116+14397933..14398253hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_x_at10/116+14397933..14398253hypothetical protein
LOC_Os06g24570OsAffx.448.1.S1_x_at1/116+14401930..14407552retrotransposon protein, putative, unclassified
LOC_Os06g24580OsAffx.28472.1.S1_x_at6/116+14413518..14414629hypothetical protein
LOC_Os06g24580OsAffx.13714.1.S1_x_at1/116+14413518..14414629hypothetical protein
LOC_Os06g24594Os.50241.1.S1_at11/116+14417164..14427792exonuclease family protein, expressed
LOC_Os06g24594Os.53187.1.S1_at11/116+14417164..14427792exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15600.1.S1_x_at--334--7331Chr06:14398142..14398166 (25 bp)
GTGCATGGCACGGAGGCAGGCTGTG
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--316--6611Chr06:14397945..14397969 (25 bp)
GTTGGCGACGGCAGGACGTGGATTT
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--918--5751Chr06:14397931..14397955 (25 bp)
GACGTGGATTTTATGGAGGTTGACC
NONE
OsAffx.15600.1.S1_x_at--799--10351Chr06:14398062..14398086 (25 bp)
TTTTATGGAGGTTGACCACGTCGTG
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--1--10431Chr06:14398060..14398084 (25 bp)
TTATGGAGGTTGACCACGTCGTGGT
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--848--6151Chr06:14398055..14398079 (25 bp)
GAGGTTGACCACGTCGTGGTCCTGT
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--745--1711Chr06:14398048..14398072 (25 bp)
ACCACGTCGTGGTCCTGTGCGGTGA
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--934--1891Chr06:14398045..14398069 (25 bp)
ACGTCGTGGTCCTGTGCGGTGATCT
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--660--7251Chr06:14398037..14398061 (25 bp)
GTCCTGTGCGGTGATCTCGGGCAAC
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--792--4271Chr06:14398035..14398059 (25 bp)
CCTGTGCGGTGATCTCGGGCAACGA
LOC_Os06g24560
OsAffx.15600.1.S1_x_at--1023--1031Chr06:14398005..14398029 (25 bp)
AGGTGCATGGCACGGAGGCAGGCTA
LOC_Os06g24560
Target Sequence 
GTGCATGGCACGGAGGCAGGCTGTGGGGAACCGACGGGGGATGGCCGACGTGGACGAGGTTGGCGACGGCAGGACGTGGA
TTTTATGGAGGTTGACCACGTCGTGGTCCTGTGCGGTGATCTCGGGCAACGACGGCGAGGTGCATGGCACGGAGGCAGGC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15600.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis