Browse Element(s) Details


Os.53187.1.S1_at

Description gb:AK071268.1
DB_XREF= gi:32981291
TID=Os.53187.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087P03, full insert sequence.
FL= gb:AK071268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2459411/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24550OsAffx.27807.1.S1_at11/116+14393106..14393456hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_at11/116+14397933..14398253hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_x_at10/116+14397933..14398253hypothetical protein
LOC_Os06g24570OsAffx.448.1.S1_x_at1/116+14401930..14407552retrotransposon protein, putative, unclassified
LOC_Os06g24580OsAffx.28472.1.S1_x_at6/116+14413518..14414629hypothetical protein
LOC_Os06g24580OsAffx.13714.1.S1_x_at1/116+14413518..14414629hypothetical protein
LOC_Os06g24594Os.50241.1.S1_at11/116+14417164..14427792exonuclease family protein, expressed
LOC_Os06g24594Os.53187.1.S1_at11/116+14417164..14427792exonuclease family protein, expressed
LOC_Os06g24610OsAffx.27809.1.S1_at6/116+14444498..14445762hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53187.1.S1_at--663--651Chr06:14427441..14427465 (25 bp)
ATGCACCATGGTGGGATTTTCCTTC
LOC_Os06g24594
Os.53187.1.S1_at--966--4131Chr06:14427409..14427433 (25 bp)
CGCGATTCACTGTCGTTTGGTTAAT
LOC_Os06g24594
Os.53187.1.S1_at--756--8731Chr06:14427385..14427409 (25 bp)
TGTAATTTTCTGTTGCCCCTTGTGA
LOC_Os06g24594
Os.53187.1.S1_at--673--9171Chr06:14427372..14427396 (25 bp)
TGCCCCTTGTGACCTGCGGTTCAGG
LOC_Os06g24594
Os.53187.1.S1_at--917--9631Chr06:14427352..14427376 (25 bp)
TCAGGTGGGTTGGATACCGTATCAA
LOC_Os06g24594
Os.53187.1.S1_at--1144--3171Chr06:14427330..14427354 (25 bp)
CAATAGGTTAGATTCAGGTTCAGGT
LOC_Os06g24594
Os.53187.1.S1_at--784--8611Chr06:14427306..14427330 (25 bp)
TGGGTGGGTACCGTATCAATTAGGT
LOC_Os06g24594
Os.53187.1.S1_at--1097--6071Chr06:14427241..14427265 (25 bp)
GAGTTTGAACTTGATGCTGGGAGAA
LOC_Os06g24594
Os.53187.1.S1_at--735--6431Chr06:14427165..14427189 (25 bp)
GATTAGTAAAACCTTAGCCTTGTAG
LOC_Os06g24594
Os.53187.1.S1_at--356--1751Chr06:14427155..14427179 (25 bp)
ACCTTAGCCTTGTAGGAGCGTCAAA
LOC_Os06g24594
Os.53187.1.S1_at--1072--10411Chr06:14427130..14427154 (25 bp)
TTATAACAATGCCTGTATCCTCCGC
LOC_Os06g24594
Target Sequence 
ATGCACCATGGTGGGATTTTCCTTCCCTTTCTCGCGATTCACTGTCGTTTGGTTAATGTAATTTTCTGTTGCCCCTTGTG
ACCTGCGGTTCAGGTGGGTTGGATACCGTATCAATAGGTTAGATTCAGGTTCAGGTGGGTGGGTACCGTATCAATTAGGT
TAGATTCAGTGCATGAGTTAATAATTAAATATGAGGATGTGAGTTTGAACTTGATGCTGGGAGAAGATAATCTCTTGTGG
AGTTGTTGTTATTTTGTGGAGAAGTATAATAGTATTGATTAGTAAAACCTTAGCCTTGTAGGAGCGTCAAATTATAACAA
TGCCTGTATCCTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis