Browse Element(s) Details


Os.53318.1.S1_at

Description gb:AK071953.1
DB_XREF= gi:32981976
TID=Os.53318.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.53318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082E19, full insert sequence.
FL= gb:AK099055.1 gb:AK071953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2890011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28890NANA2+17103378..17104592hypothetical protein
LOC_Os02g28900Os.53318.1.S1_at11/112+17112918..17114803UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g28910OsAffx.2783.1.S1_at11/112+17119397..17119882hypothetical protein
LOC_Os02g28920NANA2+17122169..17124067retrotransposon protein, putative, unclassified
LOC_Os02g28930NANA2+17126667..17127107hypothetical protein
LOC_Os02g28940OsAffx.20329.1.S1_at2/112+17127794..17128934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28950NANA2+17129166..17131056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28960NANA2+17131543..17133346retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53318.1.S1_at--1025--8511Chr02:17114300..17114324 (25 bp)
TGGAACTCGGTACTCGAGGGCATCT
LOC_Os02g28900
Os.53318.1.S1_at--709--1891Chr02:17114311..17114335 (25 bp)
ACTCGAGGGCATCTCCAATGGCGTA
LOC_Os02g28900
Os.53318.1.S1_at--100--3211Chr02:17114326..17114350 (25 bp)
CAATGGCGTACCCATGCTGTGCTAC
LOC_Os02g28900
Os.53318.1.S1_at--787--871Chr02:17114354..17114378 (25 bp)
ATGGCCGCCGATCAGCAGACAAACT
LOC_Os02g28900
Os.53318.1.S1_at--326--2371Chr02:17114374..17114398 (25 bp)
AAACTGCCGGTACGCTTGCACGGAG
LOC_Os02g28900
Os.53318.1.S1_at--379--7891Chr02:17114577..17114601 (25 bp)
GGATGGTTAATGAGGTCTTTTCTCC
LOC_Os02g28900
Os.53318.1.S1_at--116--9551Chr02:17114592..17114616 (25 bp)
TCTTTTCTCCCGGTAACAATATGTA
LOC_Os02g28900
Os.53318.1.S1_at--428--771Chr02:17114619..17114643 (25 bp)
ATGTCGAGATTTGCTGTTGTTTCTA
LOC_Os02g28900
Os.53318.1.S1_at--163--6651Chr02:17114634..17114658 (25 bp)
GTTGTTTCTAAATGCTTTCCATGTC
LOC_Os02g28900
Os.53318.1.S1_at--124--3571Chr02:17114696..17114720 (25 bp)
CATAATATGCGCTCAGTCGTGCGGG
LOC_Os02g28900
Os.53318.1.S1_at--651--10671Chr02:17114738..17114762 (25 bp)
TTCCTCCTCTAGTCTCTTATGTATA
LOC_Os02g28900
Target Sequence 
TGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTACCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTG
CCGGTACGCTTGCACGGAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATGGTGA
GGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAATGGAAGGAAAGGGCAGCCATGGCT
GTGGTGCCTAGTGNAACCTCATGGGTCAACTTAGATAGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAA
TGTCGAGATTTGCTGTTGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCACATA
ATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTTATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis