Browse Element(s) Details


OsAffx.2783.1.S1_at

Description tigr:9630.m02756
TID=OsAffx.2783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2891011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28890NANA2+17103378..17104592hypothetical protein
LOC_Os02g28900Os.53318.1.S1_at11/112+17112918..17114803UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g28910OsAffx.2783.1.S1_at11/112+17119397..17119882hypothetical protein
LOC_Os02g28920NANA2+17122169..17124067retrotransposon protein, putative, unclassified
LOC_Os02g28930NANA2+17126667..17127107hypothetical protein
LOC_Os02g28940OsAffx.20329.1.S1_at2/112+17127794..17128934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28950NANA2+17129166..17131056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28960NANA2+17131543..17133346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2783.1.S1_at--342--5431Chr02:17119427..17119451 (25 bp)
GAACCACAAGACTCTGGGCAGAACA
LOC_Os02g28910
OsAffx.2783.1.S1_at--572--8251Chr02:17119443..17119467 (25 bp)
GGCAGAACAAACACCCATTCACAAG
LOC_Os02g28910
OsAffx.2783.1.S1_at--432--2731Chr02:17119465..17119489 (25 bp)
AAGAATCCTAAAGGCGTCGGCTTGG
LOC_Os02g28910
OsAffx.2783.1.S1_at--970--1792Chr08:20522301..20522325 (25 bp)
ACCGCTGCCGCCAACAGAGGAAGAA
NONE
OsAffx.2783.1.S1_at--1097--5231Chr02:17119535..17119559 (25 bp)
GAATCTGCACCAGGGATAGCACCGG
LOC_Os02g28910
OsAffx.2783.1.S1_at--739--291Chr02:17119550..17119574 (25 bp)
ATAGCACCGGCTAGCGTACTGCAGG
LOC_Os02g28910
OsAffx.2783.1.S1_at--848--6971Chr02:17119583..17119607 (25 bp)
GTACGGGAAGTGACAACCGCCACAC
LOC_Os02g28910
OsAffx.2783.1.S1_at--811--5991Chr02:17119671..17119695 (25 bp)
GAGACGACAACCAAAGTGACGCCAA
LOC_Os02g28910
OsAffx.2783.1.S1_at--120--5751Chr02:17119748..17119772 (25 bp)
GACGGCTGCCGTAGCACCGAGCACG
LOC_Os02g28910
OsAffx.2783.1.S1_at--593--1791Chr02:17119763..17119787 (25 bp)
ACCGAGCACGGCGAAGAGTCCATCG
LOC_Os02g28910
OsAffx.2783.1.S1_at--138--691Chr02:17119796..17119820 (25 bp)
ATGACGGTCGCCGAAACGCCAAGCA
LOC_Os02g28910
Target Sequence 
GAACCACAAGACTCTGGGCAGAACAAACACCCATTCACAAGAATCCTAAAGGCGTCGGCTTGGAGGAGAATATTGACGAC
GAGCCGACCGCTGCCGCCAACAGAGGAAGAATCTGCACCAGGGATAGCACCGGCTAGCGTACTGCAGGTGACGAGAGTAC
GGGAAGTGACAACCGCCACACCGTCGAGCGCAACACACACGCCGACGCCTGCCGACGCCACCACCAGCGCAAGCGCGACG
GAGGGAGACGACAACCAAAGTGACGCCAACCACAACGTTCCCATCGACAGCACCGCCAACACAGGCGCGGCGAAGGGAGA
CGACGGCTGCCGTAGCACCGAGCACGGCGAAGAGTCCATCGCCACCTCGATGACGGTCGCCGAAACGCCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis