Browse Element(s) Details


OsAffx.24487.2.S1_s_at

Description tigr:9630.m02762
TID=OsAffx.24487.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28910OsAffx.2783.1.S1_at11/112+17119397..17119882hypothetical protein
LOC_Os02g28920NANA2+17122169..17124067retrotransposon protein, putative, unclassified
LOC_Os02g28930NANA2+17126667..17127107hypothetical protein
LOC_Os02g28940OsAffx.20329.1.S1_at2/112+17127794..17128934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28950NANA2+17129166..17131056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28960NANA2+17131543..17133346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24487.2.S1_s_at--1011--1111Chr02:17146442..17146466 (25 bp)
AGTGATCGCGTGAGTGCGTCTCTTT
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--353--7371Chr02:17146451..17146475 (25 bp)
GTGAGTGCGTCTCTTTCGTCCTCTG
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--1060--7251Chr02:17146468..17146492 (25 bp)
GTCCTCTGCTTCTAACTAGCTAGGA
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--890--9991Chr02:17146484..17146508 (25 bp)
TAGCTAGGATTTAGCACCTGCCGGT
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--1048--6511Chr02:17146491..17146515 (25 bp)
GATTTAGCACCTGCCGGTTTTGTCT
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--855--3951Chr02:17146505..17146529 (25 bp)
CGGTTTTGTCTGTCTCTGATTAGGA
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--837--8691Chr02:17146537..17146561 (25 bp)
TGTGCTGTGATGACATATCGTGCTA
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--1155--671Chr02:17146546..17146570 (25 bp)
ATGACATATCGTGCTACTGCCTGTA
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--177--1991Chr02:17146561..17146585 (25 bp)
ACTGCCTGTACGGTTCTCGGTTCAT
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--639--9931Chr02:17146569..17146593 (25 bp)
TACGGTTCTCGGTTCATGCCATGGA
LOC_Os02g28970
OsAffx.24487.2.S1_s_at--627--591Chr02:17146584..17146608 (25 bp)
ATGCCATGGATCAGCAACTGCTTGA
LOC_Os02g28970
Target Sequence 
AGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCT
GATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAAC
TGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24487.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis